Literature DB >> 27322652

Pollen DNA barcoding: current applications and future prospects.

Karen L Bell1, Natasha de Vere2, Alexander Keller3, Rodney T Richardson4, Annemarie Gous5,6, Kevin S Burgess7, Berry J Brosi1.   

Abstract

Identification of the species origin of pollen has many applications, including assessment of plant-pollinator networks, reconstruction of ancient plant communities, product authentication, allergen monitoring, and forensics. Such applications, however, have previously been limited by microscopy-based identification of pollen, which is slow, has low taxonomic resolution, and has few expert practitioners. One alternative is pollen DNA barcoding, which could overcome these issues. Recent studies demonstrate that both chloroplast and nuclear barcoding markers can be amplified from pollen. These recent validations of pollen metabarcoding indicate that now is the time for researchers in various fields to consider applying these methods to their research programs. In this paper, we review the nascent field of pollen DNA barcoding and discuss potential new applications of this technology, highlighting existing limitations and future research developments that will improve its utility in a wide range of applications.

Keywords:  DNA metabarcoding; high-throughput sequencing; metagenomics; métacodage à barres; métagénomique; next-generation sequencing; palynologie; palynology; pollen; séquençage de nouvelle génération; séquençage à haut débit

Mesh:

Substances:

Year:  2016        PMID: 27322652     DOI: 10.1139/gen-2015-0200

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  42 in total

Review 1.  Microbiomes in forensic botany: a review.

Authors:  Sarah Ishak; Eleanor Dormontt; Jennifer M Young
Journal:  Forensic Sci Med Pathol       Date:  2021-04-08       Impact factor: 2.007

2.  From writing to reading the encyclopedia of life.

Authors:  Paul D N Hebert; Peter M Hollingsworth; Mehrdad Hajibabaei
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-09-05       Impact factor: 6.237

Review 3.  Next-Generation Sequencing and Its Impacts on Entomological Research in Ecology and Evolution.

Authors:  Débora Pires Paula
Journal:  Neotrop Entomol       Date:  2021-08-10       Impact factor: 1.434

Review 4.  Improving bee health through genomics.

Authors:  Christina M Grozinger; Amro Zayed
Journal:  Nat Rev Genet       Date:  2020-02-25       Impact factor: 53.242

5.  DNA metabarcoding identifies urban foraging patterns of oligolectic and polylectic cavity-nesting bees.

Authors:  Kristen Fernandes; Kit Prendergast; Philip W Bateman; Benjamin J Saunders; Mark Gibberd; Michael Bunce; Paul Nevill
Journal:  Oecologia       Date:  2022-09-13       Impact factor: 3.298

6.  Application of Chloroplast Phylogenomics to Resolve Species Relationships Within the Plant Genus Amaranthus.

Authors:  Erika Viljoen; Damaris A Odeny; Martin P A Coetzee; Dave K Berger; David J G Rees
Journal:  J Mol Evol       Date:  2018-03-19       Impact factor: 2.395

7.  Strong variations in urban allergenicity riskscapes due to poor knowledge of tree pollen allergenic potential.

Authors:  Rita Sousa-Silva; Audrey Smargiassi; Daniel Kneeshaw; Jérôme Dupras; Kate Zinszer; Alain Paquette
Journal:  Sci Rep       Date:  2021-05-13       Impact factor: 4.379

8.  Applying pollen DNA metabarcoding to the study of plant-pollinator interactions.

Authors:  Karen L Bell; Julie Fowler; Kevin S Burgess; Emily K Dobbs; David Gruenewald; Brice Lawley; Connor Morozumi; Berry J Brosi
Journal:  Appl Plant Sci       Date:  2017-06-12       Impact factor: 1.936

9.  Pollen DNA metabarcoding identifies regional provenance and high plant diversity in Australian honey.

Authors:  Liz Milla; Kale Sniderman; Rose Lines; Mahsa Mousavi-Derazmahalleh; Francisco Encinas-Viso
Journal:  Ecol Evol       Date:  2021-06-03       Impact factor: 2.912

10.  Pollinator-Mediated Isolation May Be an Underestimated Factor in Promoting Homoploid Hybrid Speciation.

Authors:  Yongpeng Ma; Renchao Zhou; Richard Milne
Journal:  Front Plant Sci       Date:  2016-08-04       Impact factor: 5.753

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