Literature DB >> 27315434

Gene silencing and sex determination by programmed DNA elimination in parasitic nematodes.

Adrian Streit1, Jianbin Wang2, Yuanyuan Kang2, Richard E Davis3.   

Abstract

Maintenance of genome integrity is essential. However, programmed DNA elimination removes specific DNA sequences from the genome during development. DNA elimination occurs in unicellular ciliates and diverse metazoa ranging from nematodes to vertebrates. Two distinct groups of nematodes use DNA elimination to silence germline-expressed genes in the soma (ascarids) or for sex determination (Strongyloides spp.). Data suggest that DNA elimination likely evolved independently in these nematodes. Recent studies indicate that differential CENP-A deposition within chromosomes defines which sequences are retained and lost during Ascaris DNA elimination. Additional studies are needed to determine the distribution, functions, and mechanisms of DNA elimination in nematodes.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID： 27315434      PMCID： PMC4983467          DOI： 10.1016/j.mib.2016.05.012

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN： 1369-5274            Impact factor:   7.934


  40 in total

1.  New telomere formation during the process of chromatin diminution in Ascaris suum.

Authors:  Stephan Jentsch; Heinz Tobler; Fritz Müller
Journal:  Int J Dev Biol       Date:  2002-01       Impact factor: 2.203

2.  The occurrence, role and evolution of chromatin diminution in nematodes.

Authors:  C Goday; S Pimpinelli
Journal:  Parasitol Today       Date:  1993-09

3.  Genetics, chromatin diminution, and sex chromosome evolution in the parasitic nematode genus Strongyloides.

Authors:  Linda Nemetschke; Alexander G Eberhardt; Hubertus Hertzberg; Adrian Streit
Journal:  Curr Biol       Date:  2010-09-09       Impact factor: 10.834

Review 4.  The histone variant CENP-A and centromere specification.

Authors:  Ben E Black; Emily A Bassett
Journal:  Curr Opin Cell Biol       Date:  2008-01-15       Impact factor: 8.382

Review 5.  The biology of Strongyloides spp.

Authors:  Mark E Viney; James B Lok
Journal:  WormBook       Date:  2015-07-16

6.  Organization and dynamics of satellite and telomere DNAs in Ascaris: implications for formation and programmed breakdown of compound chromosomes.

Authors:  J Niedermaier; K B Moritz
Journal:  Chromosoma       Date:  2000-11       Impact factor: 4.316

7.  Analysis of the constancy of DNA sequences during development and evolution of the nematode Caenorhabditis elegans.

Authors:  S W Emmons; M R Klass; D Hirsh
Journal:  Proc Natl Acad Sci U S A       Date:  1979-03       Impact factor: 11.205

Review 8.  "Holo"er than thou: chromosome segregation and kinetochore function in C. elegans.

Authors:  Paul S Maddox; Karen Oegema; Arshad Desai; Iain M Cheeseman
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

Review 9.  Chromatin diminution in nematode development.

Authors:  H Tobler; A Etter; F Müller
Journal:  Trends Genet       Date:  1992-12       Impact factor: 11.639

10.  Genetic blueprint of the zoonotic pathogen Toxocara canis.

Authors:  Xing-Quan Zhu; Pasi K Korhonen; Huimin Cai; Neil D Young; Peter Nejsum; Georg von Samson-Himmelstjerna; Peter R Boag; Patrick Tan; Qiye Li; Jiumeng Min; Yulan Yang; Xiuhua Wang; Xiaodong Fang; Ross S Hall; Andreas Hofmann; Paul W Sternberg; Aaron R Jex; Robin B Gasser
Journal:  Nat Commun       Date:  2015-02-04       Impact factor: 14.919
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  12 in total

1.  EMBRYONIC DEVELOPMENT AND A QUANTITATIVE MODEL OF PROGRAMMED DNA ELIMINATION IN MESOCYCLOPS EDAX (S. A. FORBES, 1891) (COPEPODA: CYCLOPOIDA).

Authors:  Michelle K Clower; Ashton S Holub; Rebecca T Smith; Grace A Wyngaard
Journal:  J Crustacean Biol       Date:  2016       Impact factor: 1.430

Review 2.  Programmed DNA elimination: silencing genes and repetitive sequences in somatic cells.

Authors:  Maxim V Zagoskin; Jianbin Wang
Journal:  Biochem Soc Trans       Date:  2021-11-01       Impact factor: 4.919

3.  A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement.

Authors:  Lifang Feng; Guangying Wang; Eileen P Hamilton; Jie Xiong; Guanxiong Yan; Kai Chen; Xiao Chen; Wen Dui; Amber Plemens; Lara Khadr; Arjune Dhanekula; Mina Juma; Hung Quang Dang; Geoffrey M Kapler; Eduardo Orias; Wei Miao; Yifan Liu
Journal:  Nucleic Acids Res       Date:  2017-09-19       Impact factor: 16.971

4.  Comprehensive Chromosome End Remodeling during Programmed DNA Elimination.

Authors:  Jianbin Wang; Giovana M B Veronezi; Yuanyuan Kang; Maxim Zagoskin; Eileen T O'Toole; Richard E Davis
Journal:  Curr Biol       Date:  2020-07-16       Impact factor: 10.834

5.  Genome Analysis of Programmed DNA Elimination in Parasitic Nematodes.

Authors:  Jianbin Wang
Journal:  Methods Mol Biol       Date:  2021

6.  Comparative genome analysis of programmed DNA elimination in nematodes.

Authors:  Jianbin Wang; Shenghan Gao; Yulia Mostovoy; Yuanyuan Kang; Maxim Zagoskin; Yongqiao Sun; Bing Zhang; Laura K White; Alice Easton; Thomas B Nutman; Pui-Yan Kwok; Songnian Hu; Martin K Nielsen; Richard E Davis
Journal:  Genome Res       Date:  2017-11-08       Impact factor: 9.043

Review 7.  Functional Proteomics of Nuclear Proteins in Tetrahymena thermophila: A Review.

Authors:  Alejandro Saettone; Syed Nabeel-Shah; Jyoti Garg; Jean-Philippe Lambert; Ronald E Pearlman; Jeffrey Fillingham
Journal:  Genes (Basel)       Date:  2019-05-01       Impact factor: 4.096

8.  Germline-Specific Repetitive Elements in Programmatically Eliminated Chromosomes of the Sea Lamprey (Petromyzon marinus).

Authors:  Vladimir A Timoshevskiy; Nataliya Y Timoshevskaya; Jeramiah J Smith
Journal:  Genes (Basel)       Date:  2019-10-22       Impact factor: 4.096

9.  Molecular evidence of hybridization between pig and human Ascaris indicates an interbred species complex infecting humans.

Authors:  Alice Easton; Shenghan Gao; Scott P Lawton; Sasisekhar Bennuru; Asis Khan; Eric Dahlstrom; Rita G Oliveira; Stella Kepha; Stephen F Porcella; Joanne Webster; Roy Anderson; Michael E Grigg; Richard E Davis; Jianbin Wang; Thomas B Nutman
Journal:  Elife       Date:  2020-11-06       Impact factor: 8.140

Review 10.  Genomics of the Parasitic Nematode Ascaris and Its Relatives.

Authors:  Jianbin Wang
Journal:  Genes (Basel)       Date:  2021-03-28       Impact factor: 4.096
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