Literature DB >> 27294009

Allosteric properties of PH domains in Arf regulatory proteins.

Neeladri Sekhar Roy1, Marielle E Yohe2, Paul A Randazzo1, James M Gruschus3.   

Abstract

Pleckstrin Homology (PH) domains bind phospholipids and proteins. They are critical regulatory elements of a number enzymes including guanine nucleotide exchange factors (GEFs) and GTPase-activating proteins (GAPs) for Ras-superfamily guanine nucleotide binding proteins such as ADP-ribosylation factors (Arfs). Recent studies have indicated that many PH domains may bind more than one ligand cooperatively. Here we discuss the molecular basis of PH domain-dependent allosteric behavior of 2 ADP-ribosylation factor exchange factors, Grp1 and Brag2, cooperative binding of ligands to the PH domains of Grp1 and the Arf GTPase-activating protein, ASAP1, and the consequences for activity of the associated catalytic domains.

Entities:  

Keywords:  ADP-ribosylation factor; GTPase-activating protein; Pleckstrin homology; allosterism; cooperativity; guanine nucleotide exchange factor

Year:  2016        PMID: 27294009      PMCID: PMC4878581          DOI: 10.1080/21592799.2016.1181700

Source DB:  PubMed          Journal:  Cell Logist        ISSN: 2159-2780


  112 in total

1.  Structure of the PH domain from Bruton's tyrosine kinase in complex with inositol 1,3,4,5-tetrakisphosphate.

Authors:  E Baraldi; K Djinovic Carugo; M Hyvönen; P L Surdo; A M Riley; B V Potter; R O'Brien; J E Ladbury; M Saraste
Journal:  Structure       Date:  1999-04-15       Impact factor: 5.006

2.  Specific regulation of the adaptor protein complex AP-3 by the Arf GAP AGAP1.

Authors:  Zhongzhen Nie; Markus Boehm; Emily S Boja; William C Vass; Juan S Bonifacino; Henry M Fales; Paul A Randazzo
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3.  EFA6 facilitates the assembly of the tight junction by coordinating an Arf6-dependent and -independent pathway.

Authors:  Stéphanie Klein; Mariagrazia Partisani; Michel Franco; Frédéric Luton
Journal:  J Biol Chem       Date:  2008-09-08       Impact factor: 5.157

4.  Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains.

Authors:  Ivana Vonkova; Antoine-Emmanuel Saliba; Samy Deghou; Kanchan Anand; Stefano Ceschia; Tobias Doerks; Augustinus Galih; Karl G Kugler; Kenji Maeda; Vladimir Rybin; Vera van Noort; Jan Ellenberg; Peer Bork; Anne-Claude Gavin
Journal:  Cell Rep       Date:  2015-08-20       Impact factor: 9.423

5.  AMPA receptor signaling through BRAG2 and Arf6 critical for long-term synaptic depression.

Authors:  Ralf Scholz; Sven Berberich; Louisa Rathgeber; Alexander Kolleker; Georg Köhr; Hans-Christian Kornau
Journal:  Neuron       Date:  2010-06-10       Impact factor: 17.173

6.  Interaction of Fapp1 with Arf1 and PI4P at a membrane surface: an example of coincidence detection.

Authors:  Yizhou Liu; Richard A Kahn; James H Prestegard
Journal:  Structure       Date:  2014-01-23       Impact factor: 5.006

7.  The Arf GAP AGAP2 interacts with β-arrestin2 and regulates β2-adrenergic receptor recycling and ERK activation.

Authors:  Yuanjun Wu; Yu Zhao; Xiaojie Ma; Yunjuan Zhu; Jaimin Patel; Zhongzhen Nie
Journal:  Biochem J       Date:  2013-06-15       Impact factor: 3.857

8.  Binding of phosphatidylinositol 3,4,5-trisphosphate to the pleckstrin homology domain of protein kinase B induces a conformational change.

Authors:  Christine C Milburn; Maria Deak; Sharon M Kelly; Nick C Price; Dario R Alessi; Daan M F Van Aalten
Journal:  Biochem J       Date:  2003-11-01       Impact factor: 3.857

9.  GEP100 links epidermal growth factor receptor signalling to Arf6 activation to induce breast cancer invasion.

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Review 10.  Nomenclature for the human Arf family of GTP-binding proteins: ARF, ARL, and SAR proteins.

Authors:  Richard A Kahn; Jacqueline Cherfils; Marek Elias; Ruth C Lovering; Sean Munro; Annette Schurmann
Journal:  J Cell Biol       Date:  2006-02-27       Impact factor: 10.539

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  9 in total

Review 1.  Quantifying lipid changes in various membrane compartments using lipid binding protein domains.

Authors:  Péter Várnai; Gergő Gulyás; Dániel J Tóth; Mira Sohn; Nivedita Sengupta; Tamas Balla
Journal:  Cell Calcium       Date:  2016-12-31       Impact factor: 6.817

2.  Phosphatidylinositol 4,5-bisphosphate controls Rab7 and PLEKHM1 membrane cycling during autophagosome-lysosome fusion.

Authors:  Takashi Baba; Daniel J Toth; Nivedita Sengupta; Yeun Ju Kim; Tamas Balla
Journal:  EMBO J       Date:  2019-03-13       Impact factor: 11.598

Review 3.  Polyphosphoinositide-Binding Domains: Insights from Peripheral Membrane and Lipid-Transfer Proteins.

Authors:  Joshua G Pemberton; Tamas Balla
Journal:  Adv Exp Med Biol       Date:  2019       Impact factor: 2.622

4.  Interaction of the N terminus of ADP-ribosylation factor with the PH domain of the GTPase-activating protein ASAP1 requires phosphatidylinositol 4,5-bisphosphate.

Authors:  Neeladri Sekhar Roy; Xiaoying Jian; Olivier Soubias; Peng Zhai; Jessica R Hall; Jessica N Dagher; Nathan P Coussens; Lisa M Jenkins; Ruibai Luo; Itoro O Akpan; Matthew D Hall; R Andrew Byrd; Marielle E Yohe; Paul A Randazzo
Journal:  J Biol Chem       Date:  2019-10-06       Impact factor: 5.157

5.  In vitro reconstitution reveals phosphoinositides as cargo-release factors and activators of the ARF6 GAP ADAP1.

Authors:  Christian Duellberg; Albert Auer; Nikola Canigova; Katrin Loibl; Martin Loose
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-18       Impact factor: 11.205

Review 6.  Allosteric regulation of Arf GTPases and their GEFs at the membrane interface.

Authors:  Agata Nawrotek; Mahel Zeghouf; Jacqueline Cherfils
Journal:  Small GTPases       Date:  2016-07-22

Review 7.  ARF GTPases and their GEFs and GAPs: concepts and challenges.

Authors:  Elizabeth Sztul; Pei-Wen Chen; James E Casanova; Jacqueline Cherfils; Joel B Dacks; David G Lambright; Fang-Jen S Lee; Paul A Randazzo; Lorraine C Santy; Annette Schürmann; Ilka Wilhelmi; Marielle E Yohe; Richard A Kahn
Journal:  Mol Biol Cell       Date:  2019-05-15       Impact factor: 4.138

8.  Characterization and computational simulation of human Syx, a RhoGEF implicated in glioblastoma.

Authors:  Ryan J Boyd; Tien L Olson; James D Zook; Derek Stein; Manuel Aceves; Wan-Hsin Lin; Felicia M Craciunescu; Debra T Hansen; Panos Z Anastasiadis; Abhishek Singharoy; Petra Fromme
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9.  Differences in Expression of IQSEC2 Transcript Isoforms in Male and Female Cases with Loss of Function Variants and Neurodevelopmental Disorder.

Authors:  Beatriz Baladron; Lidia M Mielu; Estrella López-Martín; Maria J Barrero; Lidia Lopez; Jose I Alvarado; Sara Monzón; Sarai Varona; Isabel Cuesta; Rosario Cazorla; Julián Lara; Gemma Iglesias; Enriqueta Román; Purificación Ros; Gema Gomez-Mariano; Isabel Cubillo; Esther Hernandez-San Miguel; Daniel Rivera; Javier Alonso; Eva Bermejo-Sánchez; Manuel Posada; Beatriz Martínez-Delgado
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  9 in total

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