Literature DB >> 26299969

Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains.

Ivana Vonkova1, Antoine-Emmanuel Saliba2, Samy Deghou1, Kanchan Anand1, Stefano Ceschia1, Tobias Doerks1, Augustinus Galih1, Karl G Kugler1, Kenji Maeda1, Vladimir Rybin3, Vera van Noort1, Jan Ellenberg4, Peer Bork5, Anne-Claude Gavin6.   

Abstract

Many cellular processes involve the recruitment of proteins to specific membranes, which are decorated with distinctive lipids that act as docking sites. The phosphoinositides form signaling hubs, and we examine mechanisms underlying recruitment. We applied a physiological, quantitative, liposome microarray-based assay to measure the membrane-binding properties of 91 pleckstrin homology (PH) domains, the most common phosphoinositide-binding target. 10,514 experiments quantified the role of phosphoinositides in membrane recruitment. For most domains examined, the observed binding specificity implied cooperativity with additional signaling lipids. Analyses of PH domains with similar lipid-binding profiles identified a conserved motif, mutations in which-including some found in human cancers-induced discrete changes in binding affinities in vitro and protein mislocalization in vivo. The data set reveals cooperativity as a key mechanism for membrane recruitment and, by enabling the interpretation of disease-associated mutations, suggests avenues for the design of small molecules targeting PH domains.
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26299969     DOI: 10.1016/j.celrep.2015.07.054

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  30 in total

Review 1.  Polyphosphoinositide-Binding Domains: Insights from Peripheral Membrane and Lipid-Transfer Proteins.

Authors:  Joshua G Pemberton; Tamas Balla
Journal:  Adv Exp Med Biol       Date:  2019       Impact factor: 2.622

Review 2.  Allosteric properties of PH domains in Arf regulatory proteins.

Authors:  Neeladri Sekhar Roy; Marielle E Yohe; Paul A Randazzo; James M Gruschus
Journal:  Cell Logist       Date:  2016-04-26

Review 3.  Sensitivity of peripheral membrane proteins to the membrane context: A case study of phosphatidylserine and the TIM proteins.

Authors:  Daniel Kerr; Gregory T Tietjen; Zhiliang Gong; Emad Tajkhorshid; Erin J Adams; Ka Yee C Lee
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-06-18       Impact factor: 3.747

4.  Phosphatidylinositol 3-phosphate-binding protein AtPH1 controls the localization of the metal transporter NRAMP1 in Arabidopsis.

Authors:  Astrid Agorio; Jérôme Giraudat; Michele Wolfe Bianchi; Jessica Marion; Christelle Espagne; Loren Castaings; Françoise Lelièvre; Catherine Curie; Sébastien Thomine; Sylvain Merlot
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-03       Impact factor: 11.205

Review 5.  Regulation of TORC2 function and localization by Rab5 GTPases in Saccharomyces cerevisiae.

Authors:  Melissa N Locke; Jeremy Thorner
Journal:  Cell Cycle       Date:  2019-05-15       Impact factor: 4.534

6.  Association of Peripheral Membrane Proteins with Membranes: Free Energy of Binding of GRP1 PH Domain with Phosphatidylinositol Phosphate-Containing Model Bilayers.

Authors:  Fiona B Naughton; Antreas C Kalli; Mark S P Sansom
Journal:  J Phys Chem Lett       Date:  2016-03-17       Impact factor: 6.475

7.  A protocol for the systematic and quantitative measurement of protein-lipid interactions using the liposome-microarray-based assay.

Authors:  Antoine-Emmanuel Saliba; Ivana Vonkova; Samy Deghou; Stefano Ceschia; Christian Tischer; Karl G Kugler; Peer Bork; Jan Ellenberg; Anne-Claude Gavin
Journal:  Nat Protoc       Date:  2016-05-05       Impact factor: 13.491

Review 8.  Understanding the diversity of membrane lipid composition.

Authors:  Takeshi Harayama; Howard Riezman
Journal:  Nat Rev Mol Cell Biol       Date:  2018-02-07       Impact factor: 94.444

Review 9.  The systematic analysis of protein-lipid interactions comes of age.

Authors:  Antoine-Emmanuel Saliba; Ivana Vonkova; Anne-Claude Gavin
Journal:  Nat Rev Mol Cell Biol       Date:  2015-10-28       Impact factor: 94.444

10.  Flexible pivoting of dynamin pleckstrin homology domain catalyzes fission: insights into molecular degrees of freedom.

Authors:  Krishnakanth Baratam; Kirtika Jha; Anand Srivastava
Journal:  Mol Biol Cell       Date:  2021-05-12       Impact factor: 4.138

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.