Literature DB >> 28088320

Quantifying lipid changes in various membrane compartments using lipid binding protein domains.

Péter Várnai1, Gergő Gulyás1, Dániel J Tóth2, Mira Sohn3, Nivedita Sengupta3, Tamas Balla4.   

Abstract

One of the largest challenges in cell biology is to map the lipid composition of the membranes of various organelles and define the exact location of processes that control the synthesis and distribution of lipids between cellular compartments. The critical role of phosphoinositides, low-abundant lipids with rapid metabolism and exceptional regulatory importance in the control of almost all aspects of cellular functions created the need for tools to visualize their localizations and dynamics at the single cell level. However, there is also an increasing need for methods to determine the cellular distribution of other lipids regulatory or structural, such as diacylglycerol, phosphatidic acid, or other phospholipids and cholesterol. This review will summarize recent advances in this research field focusing on the means by which changes can be described in more quantitative terms. Published by Elsevier Ltd.

Entities:  

Keywords:  BRET analysis; Confocal microscopy; FRET analysis; FYVE domain; Fluorescent imaging; Membrane; PH domain; PX domain; Phosphoinositide; Phospholipase C; Phospholipid; TIRF microscopy

Mesh:

Substances:

Year:  2016        PMID: 28088320      PMCID: PMC5457350          DOI: 10.1016/j.ceca.2016.12.008

Source DB:  PubMed          Journal:  Cell Calcium        ISSN: 0143-4160            Impact factor:   6.817


  156 in total

1.  PtdIns(3)P regulates the neutrophil oxidase complex by binding to the PX domain of p40(phox).

Authors:  C D Ellson; S Gobert-Gosse; K E Anderson; K Davidson; H Erdjument-Bromage; P Tempst; J W Thuring; M A Cooper; Z Y Lim; A B Holmes; P R Gaffney; J Coadwell; E R Chilvers; P T Hawkins; L R Stephens
Journal:  Nat Cell Biol       Date:  2001-07       Impact factor: 28.824

Review 2.  Phosphatidylinositol 3,5-bisphosphate: metabolism and cellular functions.

Authors:  Robert H Michell; Victoria L Heath; Mark A Lemmon; Stephen K Dove
Journal:  Trends Biochem Sci       Date:  2005-12-20       Impact factor: 13.807

3.  Insulin-dependent translocation of ARNO to the plasma membrane of adipocytes requires phosphatidylinositol 3-kinase.

Authors:  K Venkateswarlu; P B Oatey; J M Tavaré; P J Cullen
Journal:  Curr Biol       Date:  1998-04-09       Impact factor: 10.834

4.  Orientation of cholera toxin bound to target cells.

Authors:  P A Orlandi; P H Fishman
Journal:  J Biol Chem       Date:  1993-08-15       Impact factor: 5.157

Review 5.  The Phox (PX) domain proteins and membrane traffic.

Authors:  Li-Fong Seet; Wanjin Hong
Journal:  Biochim Biophys Acta       Date:  2006-05-06

6.  G-protein signaling through tubby proteins.

Authors:  S Santagata; T J Boggon; C L Baird; C A Gomez; J Zhao; W S Shan; D G Myszka; L Shapiro
Journal:  Science       Date:  2001-05-24       Impact factor: 47.728

7.  Identification of pleckstrin-homology-domain-containing proteins with novel phosphoinositide-binding specificities.

Authors:  S Dowler; R A Currie ; D G Campbell ; M Deak; G Kular; C P Downes; D R Alessi
Journal:  Biochem J       Date:  2000-10-01       Impact factor: 3.857

8.  A comparative analysis of the phosphoinositide binding specificity of pleckstrin homology domains.

Authors:  L E Rameh; A k Arvidsson; K L Carraway; A D Couvillon; G Rathbun; A Crompton; B VanRenterghem; M P Czech; K S Ravichandran; S J Burakoff; D S Wang; C S Chen; L C Cantley
Journal:  J Biol Chem       Date:  1997-08-29       Impact factor: 5.157

9.  The pleckstrin homology domain of phosphoinositide-specific phospholipase Cdelta4 is not a critical determinant of the membrane localization of the enzyme.

Authors:  Sang Bong Lee; Péter Várnai; Andras Balla; Kees Jalink; Sue-Goo Rhee; Tamas Balla
Journal:  J Biol Chem       Date:  2004-03-22       Impact factor: 5.157

10.  Segregation of PIP2 and PIP3 into distinct nanoscale regions within the plasma membrane.

Authors:  Jie Wang; David A Richards
Journal:  Biol Open       Date:  2012-07-10       Impact factor: 2.422

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  26 in total

1.  A large scale high-throughput screen identifies chemical inhibitors of phosphatidylinositol 4-kinase type II alpha.

Authors:  Nivedita Sengupta; Marko Jović; Elena Barnaeva; David W Kim; Xin Hu; Noel Southall; Milan Dejmek; Ivana Mejdrova; Radim Nencka; Adriana Baumlova; Dominika Chalupska; Evzen Boura; Marc Ferrer; Juan Marugan; Tamas Balla
Journal:  J Lipid Res       Date:  2019-01-09       Impact factor: 5.922

2.  Detection of Plasma Membrane Phosphoinositide Dynamics Using Genetically Encoded Fluorescent Protein Probes.

Authors:  Rebecca Cabral-Dias; Yasmin Awadeh; Roberto J Botelho; Costin N Antonescu
Journal:  Methods Mol Biol       Date:  2021

3.  Quantification of Genetically Encoded Lipid Biosensors.

Authors:  Rachel C Wills; Jonathan Pacheco; Gerald R V Hammond
Journal:  Methods Mol Biol       Date:  2021

4.  Phosphatidylinositol 4,5-bisphosphate controls Rab7 and PLEKHM1 membrane cycling during autophagosome-lysosome fusion.

Authors:  Takashi Baba; Daniel J Toth; Nivedita Sengupta; Yeun Ju Kim; Tamas Balla
Journal:  EMBO J       Date:  2019-03-13       Impact factor: 11.598

Review 5.  Polyphosphoinositide-Binding Domains: Insights from Peripheral Membrane and Lipid-Transfer Proteins.

Authors:  Joshua G Pemberton; Tamas Balla
Journal:  Adv Exp Med Biol       Date:  2019       Impact factor: 2.622

Review 6.  Lipids at membrane contact sites: cell signaling and ion transport.

Authors:  Shmuel Muallem; Woo Young Chung; Archana Jha; Malini Ahuja
Journal:  EMBO Rep       Date:  2017-10-13       Impact factor: 8.807

Review 7.  Understanding phosphoinositides: rare, dynamic, and essential membrane phospholipids.

Authors:  Eamonn J Dickson; Bertil Hille
Journal:  Biochem J       Date:  2019-01-07       Impact factor: 3.857

8.  Genetic dissection of the phosphoinositide cycle in Drosophila photoreceptors.

Authors:  Che-Hsiung Liu; Murali K Bollepalli; Samuel V Long; Sabrina Asteriti; Julie Tan; Julie A Brill; Roger C Hardie
Journal:  J Cell Sci       Date:  2018-04-19       Impact factor: 5.285

9.  ORP3 phosphorylation regulates phosphatidylinositol 4-phosphate and Ca2+ dynamics at plasma membrane-ER contact sites.

Authors:  Gergő Gulyás; Mira Sohn; Yeun Ju Kim; Péter Várnai; Tamas Balla
Journal:  J Cell Sci       Date:  2020-03-16       Impact factor: 5.285

Review 10.  Phosphoinositides in autophagy: current roles and future insights.

Authors:  Lavinia Palamiuc; Archna Ravi; Brooke M Emerling
Journal:  FEBS J       Date:  2019-11-21       Impact factor: 5.622

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