Literature DB >> 27288366

Evolution of Gene Duplication in Plants.

Nicholas Panchy1, Melissa Lehti-Shiu1, Shin-Han Shiu2.   

Abstract

Ancient duplication events and a high rate of retention of extant pairs of duplicate genes have contributed to an abundance of duplicate genes in plant genomes. These duplicates have contributed to the evolution of novel functions, such as the production of floral structures, induction of disease resistance, and adaptation to stress. Additionally, recent whole-genome duplications that have occurred in the lineages of several domesticated crop species, including wheat (Triticum aestivum), cotton (Gossypium hirsutum), and soybean (Glycine max), have contributed to important agronomic traits, such as grain quality, fruit shape, and flowering time. Therefore, understanding the mechanisms and impacts of gene duplication will be important to future studies of plants in general and of agronomically important crops in particular. In this review, we survey the current knowledge about gene duplication, including gene duplication mechanisms, the potential fates of duplicate genes, models explaining duplicate gene retention, the properties that distinguish duplicate from singleton genes, and the evolutionary impact of gene duplication.
© 2016 American Society of Plant Biologists. All Rights Reserved.

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Year:  2016        PMID: 27288366      PMCID: PMC4972278          DOI: 10.1104/pp.16.00523

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  269 in total

1.  Discovery of tetraploidy in a mammal.

Authors:  M H Gallardo; J W Bickham; R L Honeycutt; R A Ojeda; N Köhler
Journal:  Nature       Date:  1999-09-23       Impact factor: 49.962

2.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

Review 3.  It's a noisy business! Genetic regulation at the nanomolar scale.

Authors:  H H McAdams; A Arkin
Journal:  Trends Genet       Date:  1999-02       Impact factor: 11.639

Review 4.  Polyploid incidence and evolution.

Authors:  S P Otto; J Whitton
Journal:  Annu Rev Genet       Date:  2000       Impact factor: 16.830

Review 5.  The natural functions of secondary metabolites.

Authors:  A L Demain; A Fang
Journal:  Adv Biochem Eng Biotechnol       Date:  2000       Impact factor: 2.635

6.  The evolutionary fate and consequences of duplicate genes.

Authors:  M Lynch; J S Conery
Journal:  Science       Date:  2000-11-10       Impact factor: 47.728

Review 7.  Structure, function and evolution of plant disease resistance genes.

Authors:  J Ellis; P Dodds; T Pryor
Journal:  Curr Opin Plant Biol       Date:  2000-08       Impact factor: 7.834

Review 8.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

Review 9.  Molecular evolution of the chalcone synthase multigene family in the morning glory genome.

Authors:  M L Durbin; B McCaig; M T Clegg
Journal:  Plant Mol Biol       Date:  2000-01       Impact factor: 4.076

Review 10.  Yeast genome evolution in the post-genome era.

Authors:  C Seoighe; K H Wolfe
Journal:  Curr Opin Microbiol       Date:  1999-10       Impact factor: 7.934

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  300 in total

1.  Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants.

Authors:  Meixia Zhao; Biao Zhang; Damon Lisch; Jianxin Ma
Journal:  Plant Cell       Date:  2017-11-27       Impact factor: 11.277

2.  Resequencing 93 accessions of coffee unveils independent and parallel selection during Coffea species divergence.

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Journal:  Plant Mol Biol       Date:  2020-02-18       Impact factor: 4.076

3.  Evolution of Cold Acclimation and Its Role in Niche Transition in the Temperate Grass Subfamily Pooideae.

Authors:  Marian Schubert; Lars Grønvold; Simen R Sandve; Torgeir R Hvidsten; Siri Fjellheim
Journal:  Plant Physiol       Date:  2019-03-08       Impact factor: 8.340

4.  Fear Not the Unknown: OPENER as a Study in Shedding Light on Genes with Unknown Function.

Authors:  Jennifer Mach
Journal:  Plant Cell       Date:  2019-05-29       Impact factor: 11.277

5.  New insights into the response of maize to fluctuations in the light environment.

Authors:  Jianzhou Qu; Xiaonan Gou; Wenxin Zhang; Ting Li; Jiquan Xue; Dongwei Guo; Shutu Xu
Journal:  Mol Genet Genomics       Date:  2021-02-25       Impact factor: 3.291

6.  A prescient evolutionary model for genesis, duplication and differentiation of MIR160 homologs in Brassicaceae.

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Journal:  Mol Genet Genomics       Date:  2021-05-29       Impact factor: 3.291

7.  Preferential gene retention increases the robustness of cold regulation in Brassicaceae and other plants after polyploidization.

Authors:  Xiao-Ming Song; Jin-Peng Wang; Peng-Chuan Sun; Xiao Ma; Qi-Hang Yang; Jing-Jing Hu; Sang-Rong Sun; Yu-Xian Li; Ji-Gao Yu; Shu-Yan Feng; Qiao-Ying Pei; Tong Yu; Nan-Shan Yang; Yin-Zhe Liu; Xiu-Qing Li; Andrew H Paterson; Xi-Yin Wang
Journal:  Hortic Res       Date:  2020-02-21       Impact factor: 6.793

8.  Complexity of gene paralogues resolved in biosynthetic pathway of hepatoprotective iridoid glycosides in a medicinal herb, Picrorhiza kurroa through differential NGS transcriptomes.

Authors:  Anjali Kharb; Rajinder S Chauhan
Journal:  Mol Genet Genomics       Date:  2021-04-25       Impact factor: 3.291

9.  Genome-wide identification, expansion, and evolution analysis of homeobox genes and their expression profiles during root development in carrot.

Authors:  Feng Que; Guang-Long Wang; Tong Li; Ya-Hui Wang; Zhi-Sheng Xu; Ai-Sheng Xiong
Journal:  Funct Integr Genomics       Date:  2018-06-16       Impact factor: 3.410

10.  A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies.

Authors:  Junha Shin; Harald Marx; Alicia Richards; Dries Vaneechoutte; Dhileepkumar Jayaraman; Junko Maeda; Sanhita Chakraborty; Michael Sussman; Klaas Vandepoele; Jean-Michel Ané; Joshua Coon; Sushmita Roy
Journal:  Nucleic Acids Res       Date:  2021-01-11       Impact factor: 16.971

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