Literature DB >> 27288269

Systematic Molecular Phenotyping: A Path Toward Precision Emergency Medicine?

Alexander T Limkakeng1, Andrew A Monte2,3, Christopher Kabrhel4, Michael Puskarich5, Laura Heitsch6, Ephraim L Tsalik7,8, Nathan I Shapiro9.   

Abstract

Precision medicine is an emerging approach to disease treatment and prevention that considers variability in patient genes, environment, and lifestyle. However, little has been written about how such research impacts emergency care. Recent advances in analytical techniques have made it possible to characterize patients in a more comprehensive and sophisticated fashion at the molecular level, promising highly individualized diagnosis and treatment. Among these techniques are various systematic molecular phenotyping analyses (e.g., genomics, transcriptomics, proteomics, and metabolomics). Although a number of emergency physicians use such techniques in their research, widespread discussion of these approaches has been lacking in the emergency care literature and many emergency physicians may be unfamiliar with them. In this article, we briefly review the underpinnings of such studies, note how they already impact acute care, discuss areas in which they might soon be applied, and identify challenges in translation to the emergency department (ED). While such techniques hold much promise, it is unclear whether the obstacles to translating their findings to the ED will be overcome in the near future. Such obstacles include validation, cost, turnaround time, user interface, decision support, standardization, and adoption by end-users.
© 2016 by the Society for Academic Emergency Medicine.

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Year:  2016        PMID: 27288269      PMCID: PMC5055430          DOI: 10.1111/acem.13027

Source DB:  PubMed          Journal:  Acad Emerg Med        ISSN: 1069-6563            Impact factor:   3.451


  35 in total

1.  Multicenter validation of the diagnostic accuracy of a blood-based gene expression test for assessing obstructive coronary artery disease in nondiabetic patients.

Authors:  Steven Rosenberg; Michael R Elashoff; Philip Beineke; Susan E Daniels; James A Wingrove; Whittemore G Tingley; Philip T Sager; Amy J Sehnert; May Yau; William E Kraus; L Kristin Newby; Robert S Schwartz; Szilard Voros; Stephen G Ellis; Naeem Tahirkheli; Ron Waksman; John McPherson; Alexandra Lansky; Mary E Winn; Nicholas J Schork; Eric J Topol
Journal:  Ann Intern Med       Date:  2010-10-05       Impact factor: 25.391

Review 2.  Genome-wide association studies--data generation, storage, interpretation, and bioinformatics.

Authors:  Guillaume Pare
Journal:  J Cardiovasc Transl Res       Date:  2010-04-08       Impact factor: 4.132

3.  Development of a large-scale de-identified DNA biobank to enable personalized medicine.

Authors:  D M Roden; J M Pulley; M A Basford; G R Bernard; E W Clayton; J R Balser; D R Masys
Journal:  Clin Pharmacol Ther       Date:  2008-05-21       Impact factor: 6.875

4.  Tissue pathology induced by snake venoms: how to understand a complex pattern of alterations from a systems biology perspective?

Authors:  José María Gutiérrez; Alexandra Rucavado; Teresa Escalante; Bruno Lomonte; Yamileth Angulo; Jay W Fox
Journal:  Toxicon       Date:  2009-08-20       Impact factor: 3.033

5.  MicroRNA signatures in peripheral blood mononuclear cells of chronic heart failure patients.

Authors:  Christine Voellenkle; Jeroen van Rooij; Claudia Cappuzzello; Simona Greco; Diego Arcelli; Luca Di Vito; Guido Melillo; Roberta Rigolini; Elena Costa; Filippo Crea; Maurizio C Capogrossi; Monica Napolitano; Fabio Martelli
Journal:  Physiol Genomics       Date:  2010-05-18       Impact factor: 3.107

6.  Baseline metabolomic profiles predict cardiovascular events in patients at risk for coronary artery disease.

Authors:  Svati H Shah; Jie-Lena Sun; Robert D Stevens; James R Bain; Michael J Muehlbauer; Karen S Pieper; Carol Haynes; Elizabeth R Hauser; William E Kraus; Christopher B Granger; Christopher B Newgard; Robert M Califf; L Kristin Newby
Journal:  Am Heart J       Date:  2012-05       Impact factor: 4.749

7.  Gene expression signatures diagnose influenza and other symptomatic respiratory viral infections in humans.

Authors:  Aimee K Zaas; Minhua Chen; Jay Varkey; Timothy Veldman; Alfred O Hero; Joseph Lucas; Yongsheng Huang; Ronald Turner; Anthony Gilbert; Robert Lambkin-Williams; N Christine Øien; Bradly Nicholson; Stephen Kingsmore; Lawrence Carin; Christopher W Woods; Geoffrey S Ginsburg
Journal:  Cell Host Microbe       Date:  2009-08-06       Impact factor: 21.023

8.  A genomic score prognostic of outcome in trauma patients.

Authors:  H Shaw Warren; Constance M Elson; Douglas L Hayden; David A Schoenfeld; J Perren Cobb; Ronald V Maier; Lyle L Moldawer; Ernest E Moore; Brian G Harbrecht; Kimberly Pelak; Joseph Cuschieri; David N Herndon; Marc G Jeschke; Celeste C Finnerty; Bernard H Brownstein; Laura Hennessy; Philip H Mason; Ronald G Tompkins
Journal:  Mol Med       Date:  2009-04-10       Impact factor: 6.354

9.  beta2-Adrenergic receptor gene polymorphism is associated with mortality in septic shock.

Authors:  Taka-Aki Nakada; James A Russell; John H Boyd; Rosalia Aguirre-Hernandez; Katherine R Thain; Simone A Thair; Emiri Nakada; Melissa McConechy; Keith R Walley
Journal:  Am J Respir Crit Care Med       Date:  2009-10-22       Impact factor: 21.405

10.  APOE genotype and extent of bleeding and outcome in lobar intracerebral haemorrhage: a genetic association study.

Authors:  Alessandro Biffi; Christopher D Anderson; Jeremiasz M Jagiella; Helena Schmidt; Brett Kissela; Björn M Hansen; Jordi Jimenez-Conde; Caroline R Pires; Alison M Ayres; Kristin Schwab; Lynelle Cortellini; Joanna Pera; Andrzej Urbanik; Javier M Romero; Natalia S Rost; Joshua N Goldstein; Anand Viswanathan; Alexander Pichler; Christian Enzinger; Raquel Rabionet; Bo Norrving; David L Tirschwell; Magdy Selim; Devin L Brown; Scott L Silliman; Bradford B Worrall; James F Meschia; Chelsea S Kidwell; Joseph P Broderick; Steven M Greenberg; Jaume Roquer; Arne Lindgren; Agnieszka Slowik; Reinhold Schmidt; Daniel Woo; Jonathan Rosand
Journal:  Lancet Neurol       Date:  2011-07-06       Impact factor: 44.182

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  6 in total

1.  The Emergency Medicine Specimen Bank: An Innovative Approach To Biobanking In Acute Care.

Authors:  Jessica L Saben; Shelby K Shelton; Andrew J Hopkinson; Brandon J Sonn; Eleanor B Mills; Makayla Welham; Megan Westmoreland; Richard Zane; Adit A Ginde; Kelly Bookman; Justin Oeth; Mark Chavez; Michael DeVivo; Alison Lakin; John Heldens; Laurie Blumberg Romero; Michael J Ames; Emily R Roberts; Matthew Taylor; Kristy Crooks; Stephen J Wicks; Kathleen C Barnes; Andrew A Monte
Journal:  Acad Emerg Med       Date:  2018-10-25       Impact factor: 3.451

2.  Metabolomic profiling of metoprolol hypertension treatment reveals altered gut microbiota-derived urinary metabolites.

Authors:  Chad N Brocker; Thomas Velenosi; Hania K Flaten; Glenn McWilliams; Kyle McDaniel; Shelby K Shelton; Jessica Saben; Kristopher W Krausz; Frank J Gonzalez; Andrew A Monte
Journal:  Hum Genomics       Date:  2020-03-11       Impact factor: 4.639

Review 3.  The Current Status of Genes and Genetic Testing in Emergency Medicine: A Narrative Review.

Authors:  Seyed Mohammad Kazem Aghamir; Mehdi Ebrahimi; Fatemeh Khatami
Journal:  Adv J Emerg Med       Date:  2019-08-25

Review 4.  Can miRNAs Be Considered as Diagnostic and Therapeutic Molecules in Ischemic Stroke Pathogenesis?-Current Status.

Authors:  Kirill V Bulygin; Narasimha M Beeraka; Aigul R Saitgareeva; Vladimir N Nikolenko; Ilgiz Gareev; Ozal Beylerli; Leila R Akhmadeeva; Liudmila M Mikhaleva; Luis Fernando Torres Solis; Arturo Solís Herrera; Marco F Avila-Rodriguez; Siva G Somasundaram; Cecil E Kirkland; Gjumrakch Aliev
Journal:  Int J Mol Sci       Date:  2020-09-14       Impact factor: 5.923

Review 5.  Machine Learning and Precision Medicine in Emergency Medicine: The Basics.

Authors:  Sangil Lee; Samuel H Lam; Thiago Augusto Hernandes Rocha; Ross J Fleischman; Catherine A Staton; Richard Taylor; Alexander T Limkakeng
Journal:  Cureus       Date:  2021-09-01

Review 6.  Precision medicine: Uses and challenges.

Authors:  Nardeep Naithani; Amar Tej Atal; T V S V G K Tilak; Biju Vasudevan; Pratibha Misra; Sharmila Sinha
Journal:  Med J Armed Forces India       Date:  2021-07-03
  6 in total

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