Literature DB >> 27277057

Dynamic PET simulator via tomographic emission projection for kinetic modeling and parametric image studies.

Ida Häggström1, Bradley J Beattie2, C Ross Schmidtlein2.   

Abstract

PURPOSE: To develop and evaluate a fast and simple tool called dpetstep (Dynamic PET Simulator of Tracers via Emission Projection), for dynamic PET simulations as an alternative to Monte Carlo (MC), useful for educational purposes and evaluation of the effects of the clinical environment, postprocessing choices, etc., on dynamic and parametric images.
METHODS: The tool was developed in matlab using both new and previously reported modules of petstep (PET Simulator of Tracers via Emission Projection). Time activity curves are generated for each voxel of the input parametric image, whereby effects of imaging system blurring, counting noise, scatters, randoms, and attenuation are simulated for each frame. Each frame is then reconstructed into images according to the user specified method, settings, and corrections. Reconstructed images were compared to MC data, and simple Gaussian noised time activity curves (GAUSS).
RESULTS: dpetstep was 8000 times faster than MC. Dynamic images from dpetstep had a root mean square error that was within 4% on average of that of MC images, whereas the GAUSS images were within 11%. The average bias in dpetstep and MC images was the same, while GAUSS differed by 3% points. Noise profiles in dpetstep images conformed well to MC images, confirmed visually by scatter plot histograms, and statistically by tumor region of interest histogram comparisons that showed no significant differences (p < 0.01). Compared to GAUSS, dpetstep images and noise properties agreed better with MC.
CONCLUSIONS: The authors have developed a fast and easy one-stop solution for simulations of dynamic PET and parametric images, and demonstrated that it generates both images and subsequent parametric images with very similar noise properties to those of MC images, in a fraction of the time. They believe dpetstep to be very useful for generating fast, simple, and realistic results, however since it uses simple scatter and random models it may not be suitable for studies investigating these phenomena. dpetstep can be downloaded free of cost from https://github.com/CRossSchmidtlein/dPETSTEP.

Entities:  

Year:  2016        PMID: 27277057      PMCID: PMC4884183          DOI: 10.1118/1.4950883

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  38 in total

1.  Experimental and clinical evaluation of iterative reconstruction (OSEM) in dynamic PET: quantitative characteristics and effects on kinetic modeling.

Authors:  R Boellaard; A van Lingen; A A Lammertsma
Journal:  J Nucl Med       Date:  2001-05       Impact factor: 10.057

2.  COMKAT: compartment model kinetic analysis tool.

Authors:  R F Muzic; S Cornelius
Journal:  J Nucl Med       Date:  2001-04       Impact factor: 10.057

Review 3.  PET kinetic analysis--compartmental model.

Authors:  Hiroshi Watabe; Yoko Ikoma; Yuichi Kimura; Mika Naganawa; Miho Shidahara
Journal:  Ann Nucl Med       Date:  2006-11       Impact factor: 2.668

Review 4.  Consensus nomenclature for in vivo imaging of reversibly binding radioligands.

Authors:  Robert B Innis; Vincent J Cunningham; Jacques Delforge; Masahiro Fujita; Albert Gjedde; Roger N Gunn; James Holden; Sylvain Houle; Sung-Cheng Huang; Masanori Ichise; Hidehiro Iida; Hiroshi Ito; Yuichi Kimura; Robert A Koeppe; Gitte M Knudsen; Juhani Knuuti; Adriaan A Lammertsma; Marc Laruelle; Jean Logan; Ralph Paul Maguire; Mark A Mintun; Evan D Morris; Ramin Parsey; Julie C Price; Mark Slifstein; Vesna Sossi; Tetsuya Suhara; John R Votaw; Dean F Wong; Richard E Carson
Journal:  J Cereb Blood Flow Metab       Date:  2007-05-09       Impact factor: 6.200

5.  Validation of GATE Monte Carlo simulations of the GE Advance/Discovery LS PET scanners.

Authors:  C Ross Schmidtlein; Assen S Kirov; Sadek A Nehmeh; Yusuf E Erdi; John L Humm; Howard I Amols; Luc M Bidaut; Alex Ganin; Charles W Stearns; David L McDaniel; Klaus A Hamacher
Journal:  Med Phys       Date:  2006-01       Impact factor: 4.071

Review 6.  Quantitative assessment of dynamic PET imaging data in cancer imaging.

Authors:  Mark Muzi; Finbarr O'Sullivan; David A Mankoff; Robert K Doot; Larry A Pierce; Brenda F Kurland; Hannah M Linden; Paul E Kinahan
Journal:  Magn Reson Imaging       Date:  2012-07-21       Impact factor: 2.546

7.  A 5D computational phantom for pharmacokinetic simulation studies in dynamic emission tomography.

Authors:  Fotis A Kotasidis; Charalampos Tsoumpas; Irene Polycarpou; Habib Zaidi
Journal:  Comput Med Imaging Graph       Date:  2014-07-07       Impact factor: 4.790

8.  Kinetics of 3'-deoxy-3'-18F-fluorothymidine during treatment monitoring of recurrent high-grade glioma.

Authors:  Christiaan Schiepers; Magnus Dahlbom; Wei Chen; Timothy Cloughesy; Johannes Czernin; Michael E Phelps; Sung-Cheng Huang
Journal:  J Nucl Med       Date:  2010-04-15       Impact factor: 10.057

9.  Semi-automatic tumour segmentation by selective navigation in a three-parameter volume, obtained by voxel-wise kinetic modelling of 11C-acetate.

Authors:  I Häggström; L Johansson; A Larsson; N Ostlund; J Sörensen; M Karlsson
Journal:  Radiat Prot Dosimetry       Date:  2010-03-03       Impact factor: 0.972

10.  PETSTEP: Generation of synthetic PET lesions for fast evaluation of segmentation methods.

Authors:  Beatrice Berthon; Ida Häggström; Aditya Apte; Bradley J Beattie; Assen S Kirov; John L Humm; Christopher Marshall; Emiliano Spezi; Anne Larsson; C Ross Schmidtlein
Journal:  Phys Med       Date:  2015-08-28       Impact factor: 2.685

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  3 in total

1.  A virtual clinical trial comparing static versus dynamic PET imaging in measuring response to breast cancer therapy.

Authors:  Kristen A Wangerin; Mark Muzi; Lanell M Peterson; Hannah M Linden; Alena Novakova; David A Mankoff; Paul E Kinahan
Journal:  Phys Med Biol       Date:  2017-02-13       Impact factor: 3.609

2.  DeepPET: A deep encoder-decoder network for directly solving the PET image reconstruction inverse problem.

Authors:  Ida Häggström; C Ross Schmidtlein; Gabriele Campanella; Thomas J Fuchs
Journal:  Med Image Anal       Date:  2019-03-30       Impact factor: 8.545

3.  Simultaneous Denoising of Dynamic PET Images Based on Deep Image Prior.

Authors:  Cheng-Hsun Yang; Hsuan-Ming Huang
Journal:  J Digit Imaging       Date:  2022-03-03       Impact factor: 4.903

  3 in total

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