Literature DB >> 18492808

Swapping metals in Fe- and Mn-dependent dioxygenases: evidence for oxygen activation without a change in metal redox state.

Joseph P Emerson1, Elena G Kovaleva, Erik R Farquhar, John D Lipscomb, Lawrence Que.   

Abstract

Biological O(2) activation often occurs after binding to a reduced metal [e.g., M(II)] in an enzyme active site. Subsequent M(II)-to-O(2) electron transfer results in a reactive M(III)-superoxo species. For the extradiol aromatic ring-cleaving dioxygenases, we have proposed a different model where an electron is transferred from substrate to O(2) via the M(II) center to which they are both bound, thereby obviating the need for an integral change in metal redox state. This model is tested by using homoprotocatechuate 2,3-dioxygenases from Brevibacterium fuscum (Fe-HPCD) and Arthrobacter globiformis (Mn-MndD) that share high sequence identity and very similar structures. Despite these similarities, Fe-HPCD binds Fe(II) whereas Mn-MndD incorporates Mn(II). Methods are described to incorporate the nonphysiological metal into each enzyme (Mn-HPCD and Fe-MndD). The x-ray crystal structure of Mn-HPCD at 1.7 A is found to be indistinguishable from that of Fe-HPCD, while EPR studies show that the Mn(II) sites of Mn-MndD and Mn-HPCD, and the Fe(II) sites of the NO complexes of Fe-HPCD and Fe-MndD, are very similar. The uniform metal site structures of these enzymes suggest that extradiol dioxygenases cannot differentially compensate for the 0.7-V gap in the redox potentials of free iron and manganese. Nonetheless, all four enzymes exhibit nearly the same K(M) and V(max) values. These enzymes constitute an unusual pair of metallo-oxygenases that remain fully active after a metal swap, implicating a different way by which metals are used to promote oxygen activation without an integral change in metal redox state.

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Year:  2008        PMID: 18492808      PMCID: PMC2396700          DOI: 10.1073/pnas.0711179105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Partition analysis and the concept of net rate constants as tools in enzyme kinetics.

Authors:  W W Cleland
Journal:  Biochemistry       Date:  1975-07-15       Impact factor: 3.162

2.  Combined spectroscopic/computational studies on Fe- and Mn-dependent superoxide dismutases: insights into second-sphere tuning of active site properties.

Authors:  Timothy A Jackson; Thomas C Brunold
Journal:  Acc Chem Res       Date:  2004-07       Impact factor: 22.384

Review 3.  Dioxygen activation at mononuclear nonheme iron active sites: enzymes, models, and intermediates.

Authors:  Miquel Costas; Mark P Mehn; Michael P Jensen; Lawrence Que
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

4.  Novel insights into the basis for Escherichia coli superoxide dismutase's metal ion specificity from Mn-substituted FeSOD and its very high E(m).

Authors:  C K Vance; A F Miller
Journal:  Biochemistry       Date:  2001-10-30       Impact factor: 3.162

5.  Mechanistic studies of two dioxygenases in the methionine salvage pathway of Klebsiella pneumoniae.

Authors:  Y Dai; T C Pochapsky; R H Abeles
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

6.  Definitive evidence for monoanionic binding of 2,3-dihydroxybiphenyl to 2,3-dihydroxybiphenyl 1,2-dioxygenase from UV resonance Raman spectroscopy, UV/Vis absorption spectroscopy, and crystallography.

Authors:  Frédéric H Vaillancourt; Christopher J Barbosa; Thomas G Spiro; Jeffrey T Bolin; Michael W Blades; Robin F B Turner; Lindsay D Eltis
Journal:  J Am Chem Soc       Date:  2002-03-20       Impact factor: 15.419

7.  The radical site in chlamydial ribonucleotide reductase defines a new R2 subclass.

Authors:  Martin Högbom; Pål Stenmark; Nina Voevodskaya; Grant McClarty; Astrid Gräslund; Pär Nordlund
Journal:  Science       Date:  2004-07-09       Impact factor: 47.728

8.  Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase.

Authors:  Nobuyuki Sato; Yoshitaka Uragami; Tomoko Nishizaki; Yoshito Takahashi; Gen Sazaki; Keisuke Sugimoto; Takamasa Nonaka; Eiji Masai; Masao Fukuda; Toshiya Senda
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

9.  A density functional investigation of the extradiol cleavage mechanism in non-heme iron catechol dioxygenases.

Authors:  Robert J Deeth; Timothy D H Bugg
Journal:  J Biol Inorg Chem       Date:  2003-02-11       Impact factor: 3.358

10.  Crystallographic comparison of manganese- and iron-dependent homoprotocatechuate 2,3-dioxygenases.

Authors:  Matthew W Vetting; Lawrence P Wackett; Lawrence Que; John D Lipscomb; Douglas H Ohlendorf
Journal:  J Bacteriol       Date:  2004-04       Impact factor: 3.490

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  46 in total

1.  In vivo self-hydroxylation of an iron-substituted manganese-dependent extradiol cleaving catechol dioxygenase.

Authors:  Erik R Farquhar; Joseph P Emerson; Kevin D Koehntop; Mark F Reynolds; Milena Trmčić; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2011-01-30       Impact factor: 3.358

Review 2.  Ring-cleaving dioxygenases with a cupin fold.

Authors:  Susanne Fetzner
Journal:  Appl Environ Microbiol       Date:  2012-01-27       Impact factor: 4.792

3.  Oxy intermediates of homoprotocatechuate 2,3-dioxygenase: facile electron transfer between substrates.

Authors:  Michael M Mbughuni; Mrinmoy Chakrabarti; Joshua A Hayden; Katlyn K Meier; Joseph J Dalluge; Michael P Hendrich; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2011-11-01       Impact factor: 3.162

4.  The shortest wire.

Authors:  Anne-Frances Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-27       Impact factor: 11.205

5.  Crystallization and preliminary crystallographic analysis of manganese(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from Bacillus sp. JF8.

Authors:  Miki Senda; Takashi Hatta; Kazuhide Kimbara; Toshiya Senda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-02-24

6.  Structure and Spectroscopy of Alkene-Cleaving Dioxygenases Containing an Atypically Coordinated Non-Heme Iron Center.

Authors:  Xuewu Sui; Andrew C Weitz; Erik R Farquhar; Mohsen Badiee; Surajit Banerjee; Johannes von Lintig; Gregory P Tochtrop; Krzysztof Palczewski; Michael P Hendrich; Philip D Kiser
Journal:  Biochemistry       Date:  2017-05-19       Impact factor: 3.162

Review 7.  Metallation and mismetallation of iron and manganese proteins in vitro and in vivo: the class I ribonucleotide reductases as a case study.

Authors:  Joseph A Cotruvo; Joanne Stubbe
Journal:  Metallomics       Date:  2012-09-18       Impact factor: 4.526

8.  Correlation between structural, spectroscopic, and reactivity properties within a series of structurally analogous metastable manganese(III)-alkylperoxo complexes.

Authors:  Michael K Coggins; Vlad Martin-Diaconescu; Serena DeBeer; Julie A Kovacs
Journal:  J Am Chem Soc       Date:  2013-03-12       Impact factor: 15.419

Review 9.  Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins.

Authors:  Julia J Griese; Vivek Srinivas; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2014-04-26       Impact factor: 3.358

10.  Intermediate in the O-O bond cleavage reaction of an extradiol dioxygenase.

Authors:  Elena G Kovaleva; John D Lipscomb
Journal:  Biochemistry       Date:  2008-10-01       Impact factor: 3.162

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