Literature DB >> 27274032

Microfluidic Studies of Biofilm Formation in Dynamic Environments.

Yutaka Yawata1, Jen Nguyen2, Roman Stocker3, Roberto Rusconi1.   

Abstract

The advent of microscale technologies, such as microfluidics, has revolutionized many areas of biology yet has only recently begun to impact the field of bacterial biofilms. By enabling accurate control and manipulation of physical and chemical conditions, these new microscale approaches afford the ability to combine important features of natural and artificial microbial habitats, such as fluid flow and ephemeral nutrient sources, with an unprecedented level of flexibility and quantification. Here, we review selected case studies to exemplify this potential, discuss limitations, and suggest that this approach opens new vistas into biofilm research over traditional setups, allowing us to expand our understanding of the formation and consequences of biofilms in a broad range of environments and applications.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Mesh:

Year:  2016        PMID: 27274032      PMCID: PMC5019069          DOI: 10.1128/JB.00118-16

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  47 in total

1.  Resource partitioning and sympatric differentiation among closely related bacterioplankton.

Authors:  Dana E Hunt; Lawrence A David; Dirk Gevers; Sarah P Preheim; Eric J Alm; Martin F Polz
Journal:  Science       Date:  2008-05-23       Impact factor: 47.728

2.  Microfluidic confinement of single cells of bacteria in small volumes initiates high-density behavior of quorum sensing and growth and reveals its variability.

Authors:  James Q Boedicker; Meghan E Vincent; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

3.  Adaptive radiation in a heterogeneous environment.

Authors:  P B Rainey; M Travisano
Journal:  Nature       Date:  1998-07-02       Impact factor: 49.962

4.  Continuous monitoring of ammonia removal activity and observation of morphology of microbial complexes in a microdevice.

Authors:  Kensuke Toda; Yutaka Yawata; Erika Setoyama; Junji Fukuda; Nobuhiko Nomura; Hiroaki Suzuki
Journal:  Appl Environ Microbiol       Date:  2011-04-22       Impact factor: 4.792

5.  Competition-dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations.

Authors:  Yutaka Yawata; Otto X Cordero; Filippo Menolascina; Jan-Hendrik Hehemann; Martin F Polz; Roman Stocker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-01       Impact factor: 11.205

Review 6.  The ecology and biogeochemistry of stream biofilms.

Authors:  Tom J Battin; Katharina Besemer; Mia M Bengtsson; Anna M Romani; Aaron I Packmann
Journal:  Nat Rev Microbiol       Date:  2016-04       Impact factor: 60.633

Review 7.  Microfluidics expanding the frontiers of microbial ecology.

Authors:  Roberto Rusconi; Melissa Garren; Roman Stocker
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

8.  Hydrodynamic attraction of swimming microorganisms by surfaces.

Authors:  Allison P Berke; Linda Turner; Howard C Berg; Eric Lauga
Journal:  Phys Rev Lett       Date:  2008-07-17       Impact factor: 9.161

9.  Solutions to the public goods dilemma in bacterial biofilms.

Authors:  Knut Drescher; Carey D Nadell; Howard A Stone; Ned S Wingreen; Bonnie L Bassler
Journal:  Curr Biol       Date:  2013-12-12       Impact factor: 10.834

10.  The curved shape of Caulobacter crescentus enhances surface colonization in flow.

Authors:  Alexandre Persat; Howard A Stone; Zemer Gitai
Journal:  Nat Commun       Date:  2014-05-08       Impact factor: 14.919

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  27 in total

Review 1.  Signal Transduction at the Single-Cell Level: Approaches to Study the Dynamic Nature of Signaling Networks.

Authors:  L Naomi Handly; Jason Yao; Roy Wollman
Journal:  J Mol Biol       Date:  2016-07-16       Impact factor: 5.469

Review 2.  Bacterial quorum sensing in complex and dynamically changing environments.

Authors:  Sampriti Mukherjee; Bonnie L Bassler
Journal:  Nat Rev Microbiol       Date:  2019-06       Impact factor: 60.633

3.  Dynamic switching enables efficient bacterial colonization in flow.

Authors:  Anerudh Kannan; Zhenbin Yang; Minyoung Kevin Kim; Howard A Stone; Albert Siryaporn
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

4.  Differential Surface Competition and Biofilm Invasion Strategies of Pseudomonas aeruginosa PA14 and PAO1.

Authors:  Swetha Kasetty; Stefan Katharios-Lanwermeyer; George A O'Toole; Carey D Nadell
Journal:  J Bacteriol       Date:  2021-09-13       Impact factor: 3.490

5.  Optically Accessible Microfluidic Flow Channels for Noninvasive High-Resolution Biofilm Imaging Using Lattice Light Sheet Microscopy.

Authors:  Ji Zhang; Mingxing Zhang; Yibo Wang; Eric Donarski; Andreas Gahlmann
Journal:  J Phys Chem B       Date:  2021-10-29       Impact factor: 2.991

6.  Competition between growth and shear stress drives intermittency in preferential flow paths in porous medium biofilms.

Authors:  Dorothee L Kurz; Eleonora Secchi; Francisco J Carrillo; Ian C Bourg; Roman Stocker; Joaquin Jimenez-Martinez
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-18       Impact factor: 12.779

Review 7.  Biofilms: Formation, Research Models, Potential Targets, and Methods for Prevention and Treatment.

Authors:  Yajuan Su; Jaime T Yrastorza; Mitchell Matis; Jenna Cusick; Siwei Zhao; Guangshun Wang; Jingwei Xie
Journal:  Adv Sci (Weinh)       Date:  2022-08-28       Impact factor: 17.521

Review 8.  Metabolic Heterogeneity and Cross-Feeding in Bacterial Multicellular Systems.

Authors:  Christopher R Evans; Christopher P Kempes; Alexa Price-Whelan; Lars E P Dietrich
Journal:  Trends Microbiol       Date:  2020-04-23       Impact factor: 17.079

Review 9.  Gastrointestinal biofilms in health and disease.

Authors:  Jean-Paul Motta; John L Wallace; André G Buret; Céline Deraison; Nathalie Vergnolle
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2021-01-28       Impact factor: 46.802

10.  Both Pseudomonas aeruginosa and Candida albicans Accumulate Greater Biomass in Dual-Species Biofilms under Flow.

Authors:  Swetha Kasetty; Dallas L Mould; Deborah A Hogan; Carey D Nadell
Journal:  mSphere       Date:  2021-06-23       Impact factor: 4.389

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