Literature DB >> 26972916

The ecology and biogeochemistry of stream biofilms.

Tom J Battin1, Katharina Besemer2, Mia M Bengtsson3, Anna M Romani4, Aaron I Packmann5.   

Abstract

Streams and rivers form dense networks, shape the Earth's surface and, in their sediments, provide an immensely large surface area for microbial growth. Biofilms dominate microbial life in streams and rivers, drive crucial ecosystem processes and contribute substantially to global biogeochemical fluxes. In turn, water flow and related deliveries of nutrients and organic matter to biofilms constitute major constraints on microbial life. In this Review, we describe the ecology and biogeochemistry of stream biofilms and highlight the influence of physical and ecological processes on their structure and function. Recent advances in the study of biofilm ecology may pave the way towards a mechanistic understanding of the effects of climate and environmental change on stream biofilms and the biogeochemistry of stream ecosystems.

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Year:  2016        PMID: 26972916     DOI: 10.1038/nrmicro.2016.15

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  74 in total

1.  Contributions of microbial biofilms to ecosystem processes in stream mesocosms.

Authors:  Tom J Battin; Louis A Kaplan; J Denis Newbold; Claude M E Hansen
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

2.  Biodiversity and ecosystem multifunctionality.

Authors:  Andy Hector; Robert Bagchi
Journal:  Nature       Date:  2007-07-12       Impact factor: 49.962

3.  Stream denitrification across biomes and its response to anthropogenic nitrate loading.

Authors:  Patrick J Mulholland; Ashley M Helton; Geoffrey C Poole; Robert O Hall; Stephen K Hamilton; Bruce J Peterson; Jennifer L Tank; Linda R Ashkenas; Lee W Cooper; Clifford N Dahm; Walter K Dodds; Stuart E G Findlay; Stanley V Gregory; Nancy B Grimm; Sherri L Johnson; William H McDowell; Judy L Meyer; H Maurice Valett; Jackson R Webster; Clay P Arango; Jake J Beaulieu; Melody J Bernot; Amy J Burgin; Chelsea L Crenshaw; Laura T Johnson; B R Niederlehner; Jonathan M O'Brien; Jody D Potter; Richard W Sheibley; Daniel J Sobota; Suzanne M Thomas
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

4.  Bacterial activity and community composition in stream water and biofilm from an urban river determined by fluorescent in situ hybridization and DGGE analysis.

Authors:  Ruben Araya; Katsuji Tani; Tatsuya Takagi; Nobuyasu Yamaguchi; Masao Nasu
Journal:  FEMS Microbiol Ecol       Date:  2003-02-01       Impact factor: 4.194

5.  Mechanisms of Competition in Biofilm Communities.

Authors:  Olaya Rendueles; Jean-Marc Ghigo
Journal:  Microbiol Spectr       Date:  2015-06

6.  Effects of fluid flow conditions on interactions between species in biofilms.

Authors:  Wei Zhang; Tadas Sileika; Aaron I Packman
Journal:  FEMS Microbiol Ecol       Date:  2013-01-24       Impact factor: 4.194

Review 7.  Imaging mass spectrometry in microbiology.

Authors:  Jeramie D Watrous; Pieter C Dorrestein
Journal:  Nat Rev Microbiol       Date:  2011-08-08       Impact factor: 60.633

8.  Biodiversity improves water quality through niche partitioning.

Authors:  Bradley J Cardinale
Journal:  Nature       Date:  2011-04-07       Impact factor: 49.962

9.  Biofilm structure and function and possible implications for riverine DOC dynamics.

Authors:  A M Romaní; H Guasch; I Muñoz; J Ruana; E Vilalta; T Schwartz; F Emtiazi; S Sabater
Journal:  Microb Ecol       Date:  2003-12-23       Impact factor: 4.552

Review 10.  Stream microbial diversity in response to environmental changes: review and synthesis of existing research.

Authors:  Lydia H Zeglin
Journal:  Front Microbiol       Date:  2015-05-18       Impact factor: 5.640

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  112 in total

1.  Potential use of high-throughput sequencing of bacterial communities for postmortem submersion interval estimation.

Authors:  Jing He; Juanjuan Guo; Xiaoliang Fu; Jifeng Cai
Journal:  Braz J Microbiol       Date:  2019-07-30       Impact factor: 2.476

2.  Microbial community assembly in a multi-layer dendritic metacommunity.

Authors:  Nathan I Wisnoski; Jay T Lennon
Journal:  Oecologia       Date:  2020-10-10       Impact factor: 3.225

3.  The role of biology in global climate change: Interdisciplinary research in biogeochemistry can help to understand local and global fluxes of carbon and other elements and inform environmental policies.

Authors:  Philip Hunter
Journal:  EMBO Rep       Date:  2017-04-10       Impact factor: 8.807

4.  Annual mass drownings of the Serengeti wildebeest migration influence nutrient cycling and storage in the Mara River.

Authors:  Amanda L Subalusky; Christopher L Dutton; Emma J Rosi; David M Post
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

5.  Suitability and setup of next-generation sequencing-based method for taxonomic characterization of aquatic microbial biofilm.

Authors:  Tomas Bakal; Jiri Janata; Lenka Sabova; Roman Grabic; Vladimir Zlabek; Lucie Najmanova
Journal:  Folia Microbiol (Praha)       Date:  2018-06-16       Impact factor: 2.099

6.  Characterization of Aquatic Biofilms with Flow Cytometry.

Authors:  Linn Sgier; Stephanie N Merbt; Ahmed Tlili; Alexandra Kroll; Anze Zupanic
Journal:  J Vis Exp       Date:  2018-06-06       Impact factor: 1.355

7.  Microbial Organic Matter Utilization in High-Arctic Streams: Key Enzymatic Controls.

Authors:  Ada Pastor; Anna Freixa; Louis J Skovsholt; Naicheng Wu; Anna M Romaní; Tenna Riis
Journal:  Microb Ecol       Date:  2019-02-10       Impact factor: 4.552

Review 8.  Biofilms: an emergent form of bacterial life.

Authors:  Hans-Curt Flemming; Jost Wingender; Ulrich Szewzyk; Peter Steinberg; Scott A Rice; Staffan Kjelleberg
Journal:  Nat Rev Microbiol       Date:  2016-08-11       Impact factor: 60.633

9.  Headwater Stream Microbial Diversity and Function across Agricultural and Urban Land Use Gradients.

Authors:  Sarah M Laperriere; Robert H Hilderbrand; Stephen R Keller; Regina Trott; Alyson E Santoro
Journal:  Appl Environ Microbiol       Date:  2020-05-19       Impact factor: 4.792

10.  Axenic Biofilm Formation and Aggregation by Synechocystis sp. Strain PCC 6803 Are Induced by Changes in Nutrient Concentration and Require Cell Surface Structures.

Authors:  Rey Allen; Bruce E Rittmann; Roy Curtiss
Journal:  Appl Environ Microbiol       Date:  2019-03-22       Impact factor: 4.792

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