| Literature DB >> 27272229 |
Shaobo Duan1, Jie Yu2, Zhiyu Han2, Zhigang Cheng2, Ping Liang2.
Abstract
BACKGROUND Hepatocellular carcinoma (HCC) is one of the most common types of liver cancer. It is hypothesized that P2RX7 genetic polymorphisms have strong association with HCC susceptibility. Therefore, a case-control study was designed and performed to verify the association between P2RX7 gene polymorphisms and HCC susceptibility. MATERIAL AND METHODS A total of 646 subjects were recruited in our study, including 323 HCC patients and 323 healthy controls. Five gene polymorphisms, -762C>T (rs2393799), 946G>A (rs28360457), 1513A>C (rs3751143), 1068G>A (rs1718119), and 1096C>G (rs2230911), were selected. Odds ratio (ORs) and 95% confidence interval (CI) were used to quantify the association between P2RX7 gene polymorphisms and the susceptibility to HCC. All tests were performed using SPSS 20 and a 2-sided P value of less than 0.05 was considered to be statistically significant. RESULTS Our results suggest that allelic frequencies of these 5 SNPs all conformed to Hardy-Weinberg equilibrium (HWE). There was no significant difference in genotype and allele distributions of -762C>T and 1096C>G between the case group and the control group. However, an increased risk of HCC was associated with 946G>A (A vs. G: OR=1.48, 95%CI=1.09-2.01, P=0.013; GA+AA vs. GG: OR=1.46, 95%CI=1.03-2.07, P=0.033). A similar increased risk was associated with 1513A>C polymorphism (C vs. A: OR=1.37, 95%CI=1.05-1.79, P=0.021; AC+CC vs. AA: OR=1.40, 95%CI=1.01-1.93, P=0.041). On the other hand, a decreased risk of HCC was associated with gene polymorphism of 1068G>A (A vs. G: OR=0.68, 95%CI=0.51-0.91, P=0.010; GA+AA vs. GG: OR=0.68, 95%CI=0.49-0.96, P=0.027; AA vs. GG: OR=0.42, 95%CI=0.18-0.99, P=0.048). CONCLUSIONS Our results suggest that 3 of the 5 polymorphisms of P2RX7 described above (1513A>C, 946G>A, and 1068G>A) are significantly associated with HCC susceptibility in a Chinese Han population. Studies with larger sample sizes are recommended to confirm whether our results will be applicable to different ethnic populations in China.Entities:
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Year: 2016 PMID: 27272229 PMCID: PMC4915328 DOI: 10.12659/msm.895763
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Comparison of HCC patients and controls by clinical characteristics.
| Clinical characteristics | HCC patients (n=323) | Relative frequency | Healthy controls (n=323) | Relative frequency | |
|---|---|---|---|---|---|
| Gender | |||||
| Male | 235 | 72.8% | 222 | 68.7% | 0.261 |
| Female | 88 | 27.2% | 101 | 31.3% | |
| Age group (year) | |||||
| ≤50 | 131 | 40.6% | 137 | 42.4% | 0.391 |
| 50–60 | 95 | 29.4% | 95 | 29.4% | |
| 60–70 | 66 | 20.4% | 55 | 17.0% | |
| >70 | 31 | 9.6% | 43 | 11.2% | |
| Smoking | |||||
| Ever | 137 | 42.4% | 121 | 37.5% | 0.199 |
| Never | 186 | 57.6% | 202 | 62.5% | |
| Drinking | |||||
| Ever | 189 | 58.5% | 113 | 35% | |
| Never | 134 | 41.5% | 210 | 65% | |
| HBsAg | |||||
| Positive | 221 | 68.4% | 29 | 9.0% | |
| Negative | 102 | 31.6% | 294 | 91.0% | |
| BCLC | |||||
| 0+A | 156 | 48.3% | – | – | |
| B+C | 167 | 51.7% | – | – | |
| Tumor size | |||||
| <5 cm | 138 | 42.7% | – | – | |
| ≥5 cm | 185 | 57.3% | – | – | |
| ALT (U/I) | |||||
| ≤40 | 136 | 42.1% | – | – | |
| >40 | 187 | 57.9% | – | – | |
| AFP (ng/ml) | |||||
| ≤20 | 83 | 25.7% | – | – | |
| >20 | 240 | 74.3% | – | – | |
| Child-Pugh | |||||
| A | 301 | 93.2% | – | – | |
| B | 22 | 6.8% | – | – | |
HCC – hepatocellular carcinoma; HBsAg – hepatitis B surface antigen; ALT – alanine transaminase; AFP – alpha fetal protein.
Figure 1The identification number and relative position of the 5 tag-SNPs together with the LD plot of the tag-SNPs (rs2393799, rs28360457, rs3751143, rs1718119, and rs2230911).
Primers and probe sequences of five SNP in P2RX7 gene.
| SNP | Primers for PCR amplification | Product size (bp) | Probes | Product size (bp) |
|---|---|---|---|---|
| −762C>T (rs2393799) | Forward: 5′-GTAGCTCTTCTGGTGGGT-3′ | 120 | SP: 5′-AGCAGCCTCAATTTACAAC-3′ | 330 |
| 946G>A (rs28360457) | Forward: 5′-CACTTTCAAAGGGATCTTA-3′ | 156 | SP: 5′-TTTTCTTCCTACAGATACGCCAAG-3′ | 171 |
| 1513A>C (rs3751143) | Forward: 5′-TAGGAAAATGGTTTGGAG-3′ | 124 | SP: 5′-CCTGGCCCTCCATGACACA-3′ | 247 |
| 1196G>A (rs1718119) | Forward: 5′-TTGCCTTCCCTCTATCTT-3′ | 461 | SP: 5′-ATAAATATGGGAGCGACA-3′ | 297 |
| 1313C>G (rs2230911) | Forward: 5′-ATAAATATGGGAGCGACA-3′ | 115 | SP: 5′-ATAAATATGGGAGCGACA-3′ | 85 |
SNP – single-nucleotide polymorphism; SP – specific probe; F – forward; R – reverse.
Allele and genotype frequencies of five SNPs in P2RX7 gene in HCC patients and controls.
| SNP | Total | Genotype frequency | HWE test | Allele frequency | MAF | Allelic model | Dominant model | Recessive model | Homozygous model | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11 | 12 | 22 | 1 allele | 2 allele | OR | 95%CI | P value | OR | 95%CI | P value | OR | 95%CI | P value | OR | 95%CI | P value | ||||
| − | ||||||||||||||||||||
| Control | 323 | 120 | 140 | 63 | 0.059 | 380 | 266 | 0.442 | 1.10 | (0.88–1.37) | 0.398 | 1.06 | (0.77–1.45) | 0.744 | 1.23 | (0.84–1.79) | 0.290 | 1.22 | (0.80–1.85) | 0.365 |
| Case | 323 | 116 | 133 | 74 | 365 | 281 | ||||||||||||||
| Control | 323 | 248 | 69 | 6 | 0.640 | 565 | 81 | 0.005 | 1.48 | (1.09–2.01) | 1.46 | (1.03–2.07) | 2.39 | (0.91–6.31) | 0.069 | 2.58 | (0.98–6.84) | |||
| Case | 323 | 224 | 85 | 14 | 533 | 113 | ||||||||||||||
| Control | 323 | 217 | 90 | 16 | 0.104 | 524 | 122 | 0.208 | 1.37 | (1.05–1.79) | 1.40 | (1.01–1.93) | 1.61 | (0.84–3.08) | 0.146 | 1.77 | (0.92–3.41) | 0.086 | ||
| Case | 323 | 192 | 106 | 25 | 490 | 156 | ||||||||||||||
| Control | 323 | 211 | 95 | 17 | 0.151 | 517 | 129 | 0.323 | 0.68 | (0.51–0.91) | 0.68 | (0.49–0.96) | 0.46 | (0.46–1.08) | 0.066 | 0.42 | (0.18–0.99) | |||
| Case | 323 | 237 | 78 | 8 | 552 | 94 | ||||||||||||||
| Control | 323 | 201 | 107 | 15 | 0.875 | 509 | 137 | 0.165 | 0.77 | (0.58–1.02) | 0.066 | 0.75 | (0.54–1.04) | 0.082 | 0.66 | (0.29–1.48) | 0.308 | 0.60 | (0.27–1.37) | 0.225 |
| Case | 323 | 222 | 91 | 10 | 535 | 111 | ||||||||||||||
MAF – minor allele frequency; P value – P value of heterogeneity test; HCC – hepatocellular carcinoma; OR – odds ratio; CI – confidence interval.