Literature DB >> 27270695

Massively Parallel Genetics.

Jay Shendure1, Stanley Fields1.   

Abstract

Human genetics has historically depended on the identification of individuals whose natural genetic variation underlies an observable trait or disease risk. Here we argue that new technologies now augment this historical approach by allowing the use of massively parallel assays in model systems to measure the functional effects of genetic variation in many human genes. These studies will help establish the disease risk of both observed and potential genetic variants and to overcome the problem of "variants of uncertain significance."
Copyright © 2016 by the Genetics Society of America.

Entities:  

Keywords:  DNA; functional assays; genetics; mutations; sequencing

Mesh:

Year:  2016        PMID: 27270695      PMCID: PMC4896180          DOI: 10.1534/genetics.115.180562

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  17 in total

1.  Functional discovery via a compendium of expression profiles.

Authors:  T R Hughes; M J Marton; A R Jones; C J Roberts; R Stoughton; C D Armour; H A Bennett; E Coffey; H Dai; Y D He; M J Kidd; A M King; M R Meyer; D Slade; P Y Lum; S B Stepaniants; D D Shoemaker; D Gachotte; K Chakraburtty; J Simon; M Bard; S H Friend
Journal:  Cell       Date:  2000-07-07       Impact factor: 41.582

Review 2.  The origins, determinants, and consequences of human mutations.

Authors:  Jay Shendure; Joshua M Akey
Journal:  Science       Date:  2015-09-24       Impact factor: 47.728

3.  Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.

Authors:  Evan Z Macosko; Anindita Basu; Rahul Satija; James Nemesh; Karthik Shekhar; Melissa Goldman; Itay Tirosh; Allison R Bialas; Nolan Kamitaki; Emily M Martersteck; John J Trombetta; David A Weitz; Joshua R Sanes; Alex K Shalek; Aviv Regev; Steven A McCarroll
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

4.  A new initiative on precision medicine.

Authors:  Francis S Collins; Harold Varmus
Journal:  N Engl J Med       Date:  2015-01-30       Impact factor: 91.245

Review 5.  The Genetic Basis of Mendelian Phenotypes: Discoveries, Challenges, and Opportunities.

Authors:  Jessica X Chong; Kati J Buckingham; Shalini N Jhangiani; Corinne Boehm; Nara Sobreira; Joshua D Smith; Tanya M Harrell; Margaret J McMillin; Wojciech Wiszniewski; Tomasz Gambin; Zeynep H Coban Akdemir; Kimberly Doheny; Alan F Scott; Dimitri Avramopoulos; Aravinda Chakravarti; Julie Hoover-Fong; Debra Mathews; P Dane Witmer; Hua Ling; Kurt Hetrick; Lee Watkins; Karynne E Patterson; Frederic Reinier; Elizabeth Blue; Donna Muzny; Martin Kircher; Kaya Bilguvar; Francesc López-Giráldez; V Reid Sutton; Holly K Tabor; Suzanne M Leal; Murat Gunel; Shrikant Mane; Richard A Gibbs; Eric Boerwinkle; Ada Hamosh; Jay Shendure; James R Lupski; Richard P Lifton; David Valle; Deborah A Nickerson; Michael J Bamshad
Journal:  Am J Hum Genet       Date:  2015-07-09       Impact factor: 11.025

6.  Massively Parallel Functional Analysis of BRCA1 RING Domain Variants.

Authors:  Lea M Starita; David L Young; Muhtadi Islam; Jacob O Kitzman; Justin Gullingsrud; Ronald J Hause; Douglas M Fowler; Jeffrey D Parvin; Jay Shendure; Stanley Fields
Journal:  Genetics       Date:  2015-03-30       Impact factor: 4.562

7.  Saturation editing of genomic regions by multiplex homology-directed repair.

Authors:  Gregory M Findlay; Evan A Boyle; Ronald J Hause; Jason C Klein; Jay Shendure
Journal:  Nature       Date:  2014-09-04       Impact factor: 49.962

8.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

9.  High-resolution mapping of protein sequence-function relationships.

Authors:  Douglas M Fowler; Carlos L Araya; Sarel J Fleishman; Elizabeth H Kellogg; Jason J Stephany; David Baker; Stanley Fields
Journal:  Nat Methods       Date:  2010-08-15       Impact factor: 28.547

Review 10.  Progress and promise in understanding the genetic basis of common diseases.

Authors:  Alkes L Price; Chris C A Spencer; Peter Donnelly
Journal:  Proc Biol Sci       Date:  2015-12-22       Impact factor: 5.349

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  8 in total

1.  A Saturation Mutagenesis Approach to Understanding PTEN Lipid Phosphatase Activity and Genotype-Phenotype Relationships.

Authors:  Taylor L Mighell; Sara Evans-Dutson; Brian J O'Roak
Journal:  Am J Hum Genet       Date:  2018-04-26       Impact factor: 11.025

2.  A yeast-based complementation assay elucidates the functional impact of 200 missense variants in human PSAT1.

Authors:  Amy Sirr; Russell S Lo; Gareth A Cromie; Adrian C Scott; Julee Ashmead; Mirutse Heyesus; Aimée M Dudley
Journal:  J Inherit Metab Dis       Date:  2020-02-27       Impact factor: 4.982

3.  Quantifying the Mutational Robustness of Protein-Coding Genes.

Authors:  Evandro Ferrada
Journal:  J Mol Evol       Date:  2021-05-02       Impact factor: 2.395

4.  Deep learning in biomedicine.

Authors:  Michael Wainberg; Daniele Merico; Andrew Delong; Brendan J Frey
Journal:  Nat Biotechnol       Date:  2018-09-06       Impact factor: 54.908

Review 5.  Exome and genome sequencing for inborn errors of immunity.

Authors:  Isabelle Meyts; Barbara Bosch; Alexandre Bolze; Bertrand Boisson; Yuval Itan; Aziz Belkadi; Vincent Pedergnana; Leen Moens; Capucine Picard; Aurélie Cobat; Xavier Bossuyt; Laurent Abel; Jean-Laurent Casanova
Journal:  J Allergy Clin Immunol       Date:  2016-10       Impact factor: 10.793

6.  Differential strengths of molecular determinants guide environment specific mutational fates.

Authors:  Rohan Dandage; Rajesh Pandey; Gopal Jayaraj; Manish Rai; David Berger; Kausik Chakraborty
Journal:  PLoS Genet       Date:  2018-05-29       Impact factor: 5.917

7.  Rare variants contribute disproportionately to quantitative trait variation in yeast.

Authors:  Joshua S Bloom; James Boocock; Sebastian Treusch; Meru J Sadhu; Laura Day; Holly Oates-Barker; Leonid Kruglyak
Journal:  Elife       Date:  2019-10-24       Impact factor: 8.140

Review 8.  Exploring absent protein function in yeast: assaying post translational modification and human genetic variation.

Authors:  Christina S Moesslacher; Johanna M Kohlmayr; Ulrich Stelzl
Journal:  Microb Cell       Date:  2021-07-02
  8 in total

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