Literature DB >> 27267401

Chemical Tools for Dissecting the Role of lncRNAs in Epigenetic Regulation.

Sarah Nainar1, Chao Feng1, Robert C Spitale1.   

Abstract

Proper control and maintenance of gene expression is critical for cellular identity and maintenance. Transcription of RNA from the genome is intimately controlled by post-translational chemical modification of histone tails and DNA. Recent studies have demonstrated that chromatin-remodeling complexes seek out their target genomic loci through the help of noncoding RNA molecules. Within this Review, we will outline how the use of biochemical techniques has shed light on the mechanisms employed by RNA to guide these complexes and therefore control gene expression.

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Year:  2016        PMID: 27267401      PMCID: PMC5068361          DOI: 10.1021/acschembio.6b00366

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  97 in total

Review 1.  Long noncoding RNAs: Lessons from genomic imprinting.

Authors:  Chandrasekhar Kanduri
Journal:  Biochim Biophys Acta       Date:  2015-05-22

Review 2.  50 years of protein acetylation: from gene regulation to epigenetics, metabolism and beyond.

Authors:  Eric Verdin; Melanie Ott
Journal:  Nat Rev Mol Cell Biol       Date:  2014-12-30       Impact factor: 94.444

3.  High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly.

Authors:  Jennifer L McGinnis; Caia D S Duncan; Kevin M Weeks
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

4.  Spatial separation of Xist RNA and polycomb proteins revealed by superresolution microscopy.

Authors:  Andrea Cerase; Daniel Smeets; Y Amy Tang; Michal Gdula; Felix Kraus; Mikhail Spivakov; Benoit Moindrot; Marion Leleu; Anna Tattermusch; Justin Demmerle; Tatyana B Nesterova; Catherine Green; Arie P Otte; Lothar Schermelleh; Neil Brockdorff
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

Review 5.  Chromatin modifiers and remodellers: regulators of cellular differentiation.

Authors:  Taiping Chen; Sharon Y R Dent
Journal:  Nat Rev Genet       Date:  2013-12-24       Impact factor: 53.242

6.  Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells.

Authors:  Jamy C Peng; Anton Valouev; Tomek Swigut; Junmei Zhang; Yingming Zhao; Arend Sidow; Joanna Wysocka
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

7.  ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.

Authors:  Joshua W K Ho; Eric Bishop; Peter V Karchenko; Nicolas Nègre; Kevin P White; Peter J Park
Journal:  BMC Genomics       Date:  2011-02-28       Impact factor: 3.969

8.  Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo.

Authors:  Silvi Rouskin; Meghan Zubradt; Stefan Washietl; Manolis Kellis; Jonathan S Weissman
Journal:  Nature       Date:  2013-12-15       Impact factor: 49.962

Review 9.  Small RNAs in transcriptional gene silencing and genome defence.

Authors:  Danesh Moazed
Journal:  Nature       Date:  2009-01-22       Impact factor: 49.962

10.  PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

Authors:  Syuzo Kaneko; Jinsook Son; Steven S Shen; Danny Reinberg; Roberto Bonasio
Journal:  Nat Struct Mol Biol       Date:  2013-10-20       Impact factor: 15.369

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  3 in total

Review 1.  Long non-coding RNAs in hepatocellular carcinoma: Potential roles and clinical implications.

Authors:  Zhao-Shan Niu; Xiao-Jun Niu; Wen-Hong Wang
Journal:  World J Gastroenterol       Date:  2017-08-28       Impact factor: 5.742

2.  Kaposi's sarcoma-associated herpesvirus polyadenylated nuclear RNA: a structural scaffold for nuclear, cytoplasmic and viral proteins.

Authors:  Joanna Sztuba-Solinska; Jason W Rausch; Rodman Smith; Jennifer T Miller; Denise Whitby; Stuart F J Le Grice
Journal:  Nucleic Acids Res       Date:  2017-06-20       Impact factor: 16.971

3.  Long Noncoding RNA MEG3 Suppresses Glioma Cell Proliferation, Migration, and Invasion by Acting as a Competing Endogenous RNA of miR-19a.

Authors:  Nan Qin; Gui-Feng Tong; Li-Wei Sun; Xiao-Lin Xu
Journal:  Oncol Res       Date:  2017-03-08       Impact factor: 5.574

  3 in total

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