Literature DB >> 27259208

When Genome Maintenance Goes Badly Awry.

Elizabeth M Kass1, Mary Ellen Moynahan2, Maria Jasin3.   

Abstract

Genetic abnormalities are present in all tumor types, although the frequency and type can vary. Chromosome abnormalities include highly aberrant structures, particularly chromothriptic chromosomes. The generation of massive sequencing data has illuminated the scope of the mutational burden in cancer genomes, identifying patterns of mutations (mutation signatures), which have the potential to shed light on the relatedness and etiologies of cancers and impact therapy response. Some mutation patterns are clearly attributable to disruptions in pathways that maintain genomic integrity. Here we review recent advances in our understanding of genetic changes occurring in cancers and the roles of genome maintenance pathways.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  BRCA1; BRCA2; Cancer genomes; chromothripsis; homologous recombination; kataegis; mutation signature

Mesh:

Substances:

Year:  2016        PMID: 27259208      PMCID: PMC4966655          DOI: 10.1016/j.molcel.2016.05.021

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  114 in total

1.  Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes.

Authors:  Jan J Molenaar; Jan Koster; Danny A Zwijnenburg; Peter van Sluis; Linda J Valentijn; Ida van der Ploeg; Mohamed Hamdi; Johan van Nes; Bart A Westerman; Jennemiek van Arkel; Marli E Ebus; Franciska Haneveld; Arjan Lakeman; Linda Schild; Piet Molenaar; Peter Stroeken; Max M van Noesel; Ingrid Ora; Evan E Santo; Huib N Caron; Ellen M Westerhout; Rogier Versteeg
Journal:  Nature       Date:  2012-02-22       Impact factor: 49.962

2.  Inherited Mutations in Women With Ovarian Carcinoma.

Authors:  Barbara M Norquist; Maria I Harrell; Mark F Brady; Tom Walsh; Ming K Lee; Suleyman Gulsuner; Sarah S Bernards; Silvia Casadei; Qian Yi; Robert A Burger; John K Chan; Susan A Davidson; Robert S Mannel; Paul A DiSilvestro; Heather A Lankes; Nilsa C Ramirez; Mary Claire King; Elizabeth M Swisher; Michael J Birrer
Journal:  JAMA Oncol       Date:  2016-04       Impact factor: 31.777

3.  Ploidy and large-scale genomic instability consistently identify basal-like breast carcinomas with BRCA1/2 inactivation.

Authors:  Tatiana Popova; Elodie Manié; Guillaume Rieunier; Virginie Caux-Moncoutier; Carole Tirapo; Thierry Dubois; Olivier Delattre; Brigitte Sigal-Zafrani; Marc Bollet; Michel Longy; Claude Houdayer; Xavier Sastre-Garau; Anne Vincent-Salomon; Dominique Stoppa-Lyonnet; Marc-Henri Stern
Journal:  Cancer Res       Date:  2012-08-29       Impact factor: 12.701

4.  A comprehensive catalogue of somatic mutations from a human cancer genome.

Authors:  Erin D Pleasance; R Keira Cheetham; Philip J Stephens; David J McBride; Sean J Humphray; Chris D Greenman; Ignacio Varela; Meng-Lay Lin; Gonzalo R Ordóñez; Graham R Bignell; Kai Ye; Julie Alipaz; Markus J Bauer; David Beare; Adam Butler; Richard J Carter; Lina Chen; Anthony J Cox; Sarah Edkins; Paula I Kokko-Gonzales; Niall A Gormley; Russell J Grocock; Christian D Haudenschild; Matthew M Hims; Terena James; Mingming Jia; Zoya Kingsbury; Catherine Leroy; John Marshall; Andrew Menzies; Laura J Mudie; Zemin Ning; Tom Royce; Ole B Schulz-Trieglaff; Anastassia Spiridou; Lucy A Stebbings; Lukasz Szajkowski; Jon Teague; David Williamson; Lynda Chin; Mark T Ross; Peter J Campbell; David R Bentley; P Andrew Futreal; Michael R Stratton
Journal:  Nature       Date:  2009-12-16       Impact factor: 49.962

5.  Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.

Authors:  Nicholas J Haradhvala; Paz Polak; Petar Stojanov; Kyle R Covington; Eve Shinbrot; Julian M Hess; Esther Rheinbay; Jaegil Kim; Yosef E Maruvka; Lior Z Braunstein; Atanas Kamburov; Philip C Hanawalt; David A Wheeler; Amnon Koren; Michael S Lawrence; Gad Getz
Journal:  Cell       Date:  2016-01-21       Impact factor: 41.582

6.  A mechanism for the suppression of homologous recombination in G1 cells.

Authors:  Alexandre Orthwein; Sylvie M Noordermeer; Marcus D Wilson; Sébastien Landry; Radoslav I Enchev; Alana Sherker; Meagan Munro; Jordan Pinder; Jayme Salsman; Graham Dellaire; Bing Xia; Matthias Peter; Daniel Durocher
Journal:  Nature       Date:  2015-12-09       Impact factor: 49.962

7.  Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin.

Authors:  Iñigo Martincorena; Amit Roshan; Moritz Gerstung; Peter Ellis; Peter Van Loo; Stuart McLaren; David C Wedge; Anthony Fullam; Ludmil B Alexandrov; Jose M Tubio; Lucy Stebbings; Andrew Menzies; Sara Widaa; Michael R Stratton; Philip H Jones; Peter J Campbell
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

8.  Patterns of genomic loss of heterozygosity predict homologous recombination repair defects in epithelial ovarian cancer.

Authors:  V Abkevich; K M Timms; B T Hennessy; J Potter; M S Carey; L A Meyer; K Smith-McCune; R Broaddus; K H Lu; J Chen; T V Tran; D Williams; D Iliev; S Jammulapati; L M FitzGerald; T Krivak; J A DeLoia; A Gutin; G B Mills; J S Lanchbury
Journal:  Br J Cancer       Date:  2012-10-09       Impact factor: 7.640

9.  Subclonal diversification of primary breast cancer revealed by multiregion sequencing.

Authors:  Lucy R Yates; Moritz Gerstung; Stian Knappskog; Christine Desmedt; Gunes Gundem; Peter Van Loo; Turid Aas; Ludmil B Alexandrov; Denis Larsimont; Helen Davies; Yilong Li; Young Seok Ju; Manasa Ramakrishna; Hans Kristian Haugland; Peer Kaare Lilleng; Serena Nik-Zainal; Stuart McLaren; Adam Butler; Sancha Martin; Dominic Glodzik; Andrew Menzies; Keiran Raine; Jonathan Hinton; David Jones; Laura J Mudie; Bing Jiang; Delphine Vincent; April Greene-Colozzi; Pierre-Yves Adnet; Aquila Fatima; Marion Maetens; Michail Ignatiadis; Michael R Stratton; Christos Sotiriou; Andrea L Richardson; Per Eystein Lønning; David C Wedge; Peter J Campbell
Journal:  Nat Med       Date:  2015-06-22       Impact factor: 53.440

10.  Human papillomavirus E6 triggers upregulation of the antiviral and cancer genomic DNA deaminase APOBEC3B.

Authors:  Valdimara C Vieira; Brandon Leonard; Elizabeth A White; Gabriel J Starrett; Nuri A Temiz; Laurel D Lorenz; Denis Lee; Marcelo A Soares; Paul F Lambert; Peter M Howley; Reuben S Harris
Journal:  mBio       Date:  2014-12-23       Impact factor: 7.867

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  32 in total

1.  RADX Promotes Genome Stability and Modulates Chemosensitivity by Regulating RAD51 at Replication Forks.

Authors:  Huzefa Dungrawala; Kamakoti P Bhat; Rémy Le Meur; Walter J Chazin; Xia Ding; Shyam K Sharan; Sarah R Wessel; Aditya A Sathe; Runxiang Zhao; David Cortez
Journal:  Mol Cell       Date:  2017-07-20       Impact factor: 17.970

2.  Modeling cancer rearrangement landscapes.

Authors:  John Maciejowski; Marcin Imielinski
Journal:  Curr Opin Syst Biol       Date:  2016-12-14

3.  RPA Stabilization of Single-Stranded DNA Is Critical for Break-Induced Replication.

Authors:  Patrick Ruff; Roberto A Donnianni; Eleanor Glancy; Julyun Oh; Lorraine S Symington
Journal:  Cell Rep       Date:  2016-12-20       Impact factor: 9.423

4.  Characterization of breakpoint regions of large structural autosomal mosaic events.

Authors:  Mitchell J Machiela; Lea Jessop; Weiyin Zhou; Meredith Yeager; Stephen J Chanock
Journal:  Hum Mol Genet       Date:  2017-11-15       Impact factor: 6.150

Review 5.  Living Organisms Author Their Read-Write Genomes in Evolution.

Authors:  James A Shapiro
Journal:  Biology (Basel)       Date:  2017-12-06

6.  RNF168 regulates R-loop resolution and genomic stability in BRCA1/2-deficient tumors.

Authors:  Parasvi S Patel; Karan Joshua Abraham; Kiran Kumar Naidu Guturi; Marie-Jo Halaby; Zahra Khan; Luis Palomero; Brandon Ho; Shili Duan; Jonathan St-Germain; Arash Algouneh; Francesca Mateo; Samah El Ghamrasni; Haithem Barbour; Daniel R Barnes; Jonathan Beesley; Otto Sanchez; Hal K Berman; Grant W Brown; El Bachir Affar; Georgia Chenevix-Trench; Antonis C Antoniou; Cheryl H Arrowsmith; Brian Raught; Miquel Angel Pujana; Karim Mekhail; Anne Hakem; Razqallah Hakem
Journal:  J Clin Invest       Date:  2021-02-01       Impact factor: 14.808

Review 7.  A change of view: homologous recombination at single-molecule resolution.

Authors:  Kyle Kaniecki; Luisina De Tullio; Eric C Greene
Journal:  Nat Rev Genet       Date:  2017-12-11       Impact factor: 53.242

8.  Specific expression of PD-L1 in RELA-fusion supratentorial ependymoma: Implications for PD-1-targeted therapy.

Authors:  Davis A Witt; Andrew M Donson; Vladimir Amani; Daniel C Moreira; Bridget Sanford; Lindsey M Hoffman; Michael H Handler; Jean M Mulcahy Levy; Kenneth L Jones; Anandani Nellan; Nicholas K Foreman; Andrea M Griesinger
Journal:  Pediatr Blood Cancer       Date:  2018-01-19       Impact factor: 3.167

9.  Human RAD52 interactions with replication protein A and the RAD51 presynaptic complex.

Authors:  Chu Jian Ma; Youngho Kwon; Patrick Sung; Eric C Greene
Journal:  J Biol Chem       Date:  2017-05-27       Impact factor: 5.157

10.  Single-Stranded DNA Curtains for Studying the Srs2 Helicase Using Total Internal Reflection Fluorescence Microscopy.

Authors:  Luisina De Tullio; Kyle Kaniecki; Eric C Greene
Journal:  Methods Enzymol       Date:  2018-02-01       Impact factor: 1.600

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