Literature DB >> 27259201

Greater Than the Sum of Parts: Complexity of the Dynamic Epigenome.

Alexey A Soshnev1, Steven Z Josefowicz2, C David Allis3.   

Abstract

Information encoded in DNA is interpreted, modified, and propagated as chromatin. The diversity of inputs encountered by eukaryotic genomes demands a matching capacity for transcriptional outcomes provided by the combinatorial and dynamic nature of epigenetic processes. Advances in genome editing, visualization technology, and genome-wide analyses have revealed unprecedented complexity of chromatin pathways, offering explanations to long-standing questions and presenting new challenges. Here, we review recent findings, exemplified by the emerging understanding of crossregulatory interactions within chromatin, and emphasize the pathologic outcomes of epigenetic misregulation in cancer.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27259201      PMCID: PMC4898265          DOI: 10.1016/j.molcel.2016.05.004

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  131 in total

1.  Oncogenesis by sequestration of CBP/p300 in transcriptionally inactive hyperacetylated chromatin domains.

Authors:  Nicolas Reynoird; Brian E Schwartz; Manuela Delvecchio; Karin Sadoul; David Meyers; Chandrani Mukherjee; Cécile Caron; Hiroshi Kimura; Sophie Rousseaux; Philip A Cole; Daniel Panne; Christopher A French; Saadi Khochbin
Journal:  EMBO J       Date:  2010-07-30       Impact factor: 11.598

2.  MDC1 maintains genomic stability by participating in the amplification of ATM-dependent DNA damage signals.

Authors:  Zhenkun Lou; Katherine Minter-Dykhouse; Sonia Franco; Monica Gostissa; Melissa A Rivera; Arkady Celeste; John P Manis; Jan van Deursen; André Nussenzweig; Tanya T Paull; Frederick W Alt; Junjie Chen
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

Review 3.  Histone variants in pluripotency and disease.

Authors:  Peter J Skene; Steven Henikoff
Journal:  Development       Date:  2013-06       Impact factor: 6.868

Review 4.  Transcriptional regulation by Polycomb group proteins.

Authors:  Luciano Di Croce; Kristian Helin
Journal:  Nat Struct Mol Biol       Date:  2013-10       Impact factor: 15.369

5.  A histone mutant reproduces the phenotype caused by loss of histone-modifying factor Polycomb.

Authors:  Ana Raquel Pengelly; Ömer Copur; Herbert Jäckle; Alf Herzig; Jürg Müller
Journal:  Science       Date:  2013-02-08       Impact factor: 47.728

6.  H3K36 methylation antagonizes PRC2-mediated H3K27 methylation.

Authors:  Wen Yuan; Mo Xu; Chang Huang; Nan Liu; She Chen; Bing Zhu
Journal:  J Biol Chem       Date:  2011-01-14       Impact factor: 5.157

7.  Rapid histone H3 phosphorylation in response to growth factors, phorbol esters, okadaic acid, and protein synthesis inhibitors.

Authors:  L C Mahadevan; A C Willis; M J Barratt
Journal:  Cell       Date:  1991-05-31       Impact factor: 41.582

8.  Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail.

Authors:  Yingying Zhang; Renata Jurkowska; Szabolcs Soeroes; Arumugam Rajavelu; Arunkumar Dhayalan; Ina Bock; Philipp Rathert; Ole Brandt; Richard Reinhardt; Wolfgang Fischle; Albert Jeltsch
Journal:  Nucleic Acids Res       Date:  2010-03-11       Impact factor: 16.971

9.  Increased methylation variation in epigenetic domains across cancer types.

Authors:  Kasper Daniel Hansen; Winston Timp; Héctor Corrada Bravo; Sarven Sabunciyan; Benjamin Langmead; Oliver G McDonald; Bo Wen; Hao Wu; Yun Liu; Dinh Diep; Eirikur Briem; Kun Zhang; Rafael A Irizarry; Andrew P Feinberg
Journal:  Nat Genet       Date:  2011-06-26       Impact factor: 38.330

10.  Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells.

Authors:  Simon J Elsässer; Laura A Banaszynski; Kyung-Min Noh; Nichole Diaz; C David Allis
Journal:  Nature       Date:  2015-05-04       Impact factor: 49.962

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  58 in total

1.  Unique and Shared Roles for Histone H3K36 Methylation States in Transcription Regulation Functions.

Authors:  Julia V DiFiore; Travis S Ptacek; Yi Wang; Bing Li; Jeremy M Simon; Brian D Strahl
Journal:  Cell Rep       Date:  2020-06-09       Impact factor: 9.423

2.  Emerging Chemistry Strategies for Engineering Native Chromatin.

Authors:  Yael David; Tom W Muir
Journal:  J Am Chem Soc       Date:  2017-06-27       Impact factor: 15.419

Review 3.  The genetic basis of disease.

Authors:  Maria Jackson; Leah Marks; Gerhard H W May; Joanna B Wilson
Journal:  Essays Biochem       Date:  2018-12-02       Impact factor: 8.000

4.  Epigenetic Compensation Promotes Liver Regeneration.

Authors:  Shuang Wang; Chi Zhang; Dan Hasson; Anal Desai; Sucharita SenBanerjee; Elena Magnani; Chinweike Ukomadu; Amaia Lujambio; Emily Bernstein; Kirsten C Sadler
Journal:  Dev Cell       Date:  2019-06-20       Impact factor: 12.270

5.  Learning the Formation Mechanism of Domain-Level Chromatin States with Epigenomics Data.

Authors:  Wen Jun Xie; Bin Zhang
Journal:  Biophys J       Date:  2019-04-11       Impact factor: 4.033

Review 6.  Yin-yang actions of histone methylation regulatory complexes in the brain.

Authors:  Patricia Marie Garay; Margarete Aryanka Wallner; Shigeki Iwase
Journal:  Epigenomics       Date:  2016-11-18       Impact factor: 4.778

Review 7.  Restarting Lytic Gene Transcription at the Onset of Herpes Simplex Virus Reactivation.

Authors:  Anna R Cliffe; Angus C Wilson
Journal:  J Virol       Date:  2017-01-03       Impact factor: 5.103

Review 8.  Transcriptional Addiction in Cancer.

Authors:  James E Bradner; Denes Hnisz; Richard A Young
Journal:  Cell       Date:  2017-02-09       Impact factor: 41.582

Review 9.  Genetic and epigenomic mechanisms of mammalian circadian transcription.

Authors:  Romeo Papazyan; Yuxiang Zhang; Mitchell A Lazar
Journal:  Nat Struct Mol Biol       Date:  2016-12-06       Impact factor: 15.369

10.  Dynamic Control of X Chromosome Conformation and Repression by a Histone H4K20 Demethylase.

Authors:  Katjuša Brejc; Qian Bian; Satoru Uzawa; Bayly S Wheeler; Erika C Anderson; David S King; Philip J Kranzusch; Christine G Preston; Barbara J Meyer
Journal:  Cell       Date:  2017-08-31       Impact factor: 41.582

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