Literature DB >> 27259117

A comprehensive numerical analysis of background phase correction with V-SHARP.

Pinar Senay Özbay1,2, Andreas Deistung3, Xiang Feng3,4, Daniel Nanz1, Jürgen Rainer Reichenbach3,5, Ferdinand Schweser4,6.   

Abstract

Sophisticated harmonic artifact reduction for phase data (SHARP) is a method to remove background field contributions in MRI phase images, which is an essential processing step for quantitative susceptibility mapping (QSM). To perform SHARP, a spherical kernel radius and a regularization parameter need to be defined. In this study, we carried out an extensive analysis of the effect of these two parameters on the corrected phase images and on the reconstructed susceptibility maps. As a result of the dependence of the parameters on acquisition and processing characteristics, we propose a new SHARP scheme with generalized parameters. The new SHARP scheme uses a high-pass filtering approach to define the regularization parameter. We employed the variable-kernel SHARP (V-SHARP) approach, using different maximum radii (Rm ) between 1 and 15 mm and varying regularization parameters (f) in a numerical brain model. The local root-mean-square error (RMSE) between the ground-truth, background-corrected field map and the results from SHARP decreased towards the center of the brain. RMSE of susceptibility maps calculated with a spatial domain algorithm was smallest for Rm between 6 and 10 mm and f between 0 and 0.01 mm-1 , and for maps calculated with a Fourier domain algorithm for Rm between 10 and 15 mm and f between 0 and 0.0091 mm-1 . We demonstrated and confirmed the new parameter scheme in vivo. The novel regularization scheme allows the use of the same regularization parameter irrespective of other imaging parameters, such as image resolution.
Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Entities:  

Keywords:  background field removal; phase; quantitative susceptibility mapping (QSM); sophisticated harmonic artifact reduction for phase data (SHARP)

Mesh:

Year:  2016        PMID: 27259117      PMCID: PMC5136354          DOI: 10.1002/nbm.3550

Source DB:  PubMed          Journal:  NMR Biomed        ISSN: 0952-3480            Impact factor:   4.044


  28 in total

1.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

2.  Quantitative imaging of intrinsic magnetic tissue properties using MRI signal phase: an approach to in vivo brain iron metabolism?

Authors:  Ferdinand Schweser; Andreas Deistung; Berengar Wendel Lehr; Jürgen Rainer Reichenbach
Journal:  Neuroimage       Date:  2010-10-30       Impact factor: 6.556

Review 3.  Imaging iron stores in the brain using magnetic resonance imaging.

Authors:  E Mark Haacke; Norman Y C Cheng; Michael J House; Qiang Liu; Jaladhar Neelavalli; Robert J Ogg; Asadullah Khan; Muhammad Ayaz; Wolff Kirsch; Andre Obenaus
Journal:  Magn Reson Imaging       Date:  2005-01       Impact factor: 2.546

4.  Quantitative MR susceptibility mapping using piece-wise constant regularized inversion of the magnetic field.

Authors:  Ludovic de Rochefort; Ryan Brown; Martin R Prince; Yi Wang
Journal:  Magn Reson Med       Date:  2008-10       Impact factor: 4.668

5.  Fast and robust three-dimensional best path phase unwrapping algorithm.

Authors:  Hussein S Abdul-Rahman; Munther A Gdeisat; David R Burton; Michael J Lalor; Francis Lilley; Christopher J Moore
Journal:  Appl Opt       Date:  2007-09-10       Impact factor: 1.980

6.  Magnetic susceptibility measurement of insoluble solids by NMR: magnetic susceptibility of bone.

Authors:  J A Hopkins; F W Wehrli
Journal:  Magn Reson Med       Date:  1997-04       Impact factor: 4.668

7.  Morphology enabled dipole inversion (MEDI) from a single-angle acquisition: comparison with COSMOS in human brain imaging.

Authors:  Tian Liu; Jing Liu; Ludovic de Rochefort; Pascal Spincemaille; Ildar Khalidov; James Robert Ledoux; Yi Wang
Journal:  Magn Reson Med       Date:  2011-04-04       Impact factor: 4.668

8.  Toward online reconstruction of quantitative susceptibility maps: superfast dipole inversion.

Authors:  Ferdinand Schweser; Andreas Deistung; Karsten Sommer; Jürgen Rainer Reichenbach
Journal:  Magn Reson Med       Date:  2012-07-12       Impact factor: 4.668

9.  A novel background field removal method for MRI using projection onto dipole fields (PDF).

Authors:  Tian Liu; Ildar Khalidov; Ludovic de Rochefort; Pascal Spincemaille; Jing Liu; A John Tsiouris; Yi Wang
Journal:  NMR Biomed       Date:  2011-03-08       Impact factor: 4.044

10.  Development of a robust method for generating 7.0 T multichannel phase images of the brain with application to normal volunteers and patients with neurological diseases.

Authors:  Kathryn E Hammond; Janine M Lupo; Duan Xu; Meredith Metcalf; Douglas A C Kelley; Daniel Pelletier; Susan M Chang; Pratik Mukherjee; Daniel B Vigneron; Sarah J Nelson
Journal:  Neuroimage       Date:  2007-11-07       Impact factor: 6.556

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  19 in total

1.  Background field removal using a region adaptive kernel for quantitative susceptibility mapping of human brain.

Authors:  Jinsheng Fang; Lijun Bao; Xu Li; Peter C M van Zijl; Zhong Chen
Journal:  J Magn Reson       Date:  2017-05-10       Impact factor: 2.229

2.  Visualization of thalamic calcium influx with quantitative susceptibility mapping as a potential imaging biomarker for repeated mild traumatic brain injury.

Authors:  Ferdinand Schweser; Jenni Kyyriäinen; Marilena Preda; Asla Pitkänen; Kathryn Toffolo; Austin Poulsen; Kaitlynn Donahue; Benett Levy; David Poulsen
Journal:  Neuroimage       Date:  2019-06-12       Impact factor: 6.556

3.  Mapping of thalamic magnetic susceptibility in multiple sclerosis indicates decreasing iron with disease duration: A proposed mechanistic relationship between inflammation and oligodendrocyte vitality.

Authors:  Ferdinand Schweser; Ana Luiza Raffaini Duarte Martins; Jesper Hagemeier; Fuchun Lin; Jannis Hanspach; Bianca Weinstock-Guttman; Simon Hametner; Niels Bergsland; Michael G Dwyer; Robert Zivadinov
Journal:  Neuroimage       Date:  2017-10-31       Impact factor: 6.556

Review 4.  An illustrated comparison of processing methods for phase MRI and QSM: removal of background field contributions from sources outside the region of interest.

Authors:  Ferdinand Schweser; Simon Daniel Robinson; Ludovic de Rochefort; Wei Li; Kristian Bredies
Journal:  NMR Biomed       Date:  2016-10-07       Impact factor: 4.044

5.  Phase-based masking for quantitative susceptibility mapping of the human brain at 9.4T.

Authors:  Gisela E Hagberg; Korbinian Eckstein; Elisa Tuzzi; Jiazheng Zhou; Simon Robinson; Klaus Scheffler
Journal:  Magn Reson Med       Date:  2022-06-26       Impact factor: 3.737

6.  Background field removal for susceptibility mapping of human brain with large susceptibility variations.

Authors:  Jinsheng Fang; Lijun Bao; Xu Li; Peter C M van Zijl; Zhong Chen
Journal:  Magn Reson Med       Date:  2018-10-09       Impact factor: 4.668

7.  Iterative Restoration of the Fringe Phase (REFRASE) for QSM.

Authors:  Johannes Lindemeyer; Wieland A Worthoff; Aliaksandra Shymanskaya; N Jon Shah
Journal:  Front Neurosci       Date:  2021-05-13       Impact factor: 4.677

8.  Single-step calculation of susceptibility through multiple orientation sampling.

Authors:  Lin Chen; Shuhui Cai; Peter C M van Zijl; Xu Li
Journal:  NMR Biomed       Date:  2021-04-06       Impact factor: 4.478

9.  Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology.

Authors:  Menuka Pallebage-Gamarallage; Sean Foxley; Ricarda A L Menke; Istvan N Huszar; Mark Jenkinson; Benjamin C Tendler; Chaoyue Wang; Saad Jbabdi; Martin R Turner; Karla L Miller; Olaf Ansorge
Journal:  BMC Neurosci       Date:  2018-03-13       Impact factor: 3.288

Review 10.  An illustrated comparison of processing methods for MR phase imaging and QSM: combining array coil signals and phase unwrapping.

Authors:  Simon Daniel Robinson; Kristian Bredies; Diana Khabipova; Barbara Dymerska; José P Marques; Ferdinand Schweser
Journal:  NMR Biomed       Date:  2016-09-13       Impact factor: 4.044

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