Literature DB >> 2725514

Introduction of functional artificial introns into the naturally intronless ura4 gene of Schizosaccharomyces pombe.

K B Gatermann1, A Hoffmann, G H Rosenberg, N F Käufer.   

Abstract

Insertion of a 36-base-pair (bp) synthetic oligonucleotide comprising the sequence 5'-GTAGGT(19N)CTAAT (4N)AG-3' into several different positions within the coding region of the naturally intronless ura4 gene of Schizosaccharomyces pombe leads to an efficiently spliced gene producing a functional product. This suggests that the proper signals within an intron are sufficient to initiate and complete a splicing event independent of the location of the intron in the gene. Point mutations in the 5' junction (5'-GTAGGT-3') and in the putative branch sequence (5'-CTAAT-3') affect splicing efficiency significantly. A G-to-A transition at the first nucleotide at the 5' splice junction (5'-ATAGGT-3') abolishes the use of the authentic splice junction and leads to the increased use of an alternative splice site. No functional product is produced from this transcript. An A-to-G transition of the second A in the putative branch sequence (5'-CTAGT-3') lowers the splicing efficiency drastically, but still results in a functional gene product. Furthermore, extension of the 36-bp intron to introns more than 180 bp in size abolishes splicing, suggesting that the splicing apparatus might be restricted to very short introns. We discuss the possibility that S. pombe introns represent a simple type of eucaryotic intron.

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Year:  1989        PMID: 2725514      PMCID: PMC362569          DOI: 10.1128/mcb.9.4.1526-1535.1989

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  50 in total

1.  Excision of an intact intron as a novel lariat structure during pre-mRNA splicing in vitro.

Authors:  B Ruskin; A R Krainer; T Maniatis; M R Green
Journal:  Cell       Date:  1984-08       Impact factor: 41.582

2.  Splice site selection and ribonucleoprotein complex assembly during in vitro pre-mRNA splicing.

Authors:  K K Nelson; M R Green
Journal:  Genes Dev       Date:  1988-03       Impact factor: 11.361

3.  In vivo splicing products of the rabbit beta-globin pre-mRNA.

Authors:  S Zeitlin; A Efstratiadis
Journal:  Cell       Date:  1984-12       Impact factor: 41.582

4.  Lariat RNA's as intermediates and products in the splicing of messenger RNA precursors.

Authors:  R A Padgett; M M Konarska; P J Grabowski; S F Hardy; P A Sharp
Journal:  Science       Date:  1984-08-31       Impact factor: 47.728

5.  A catalogue of splice junction sequences.

Authors:  S M Mount
Journal:  Nucleic Acids Res       Date:  1982-01-22       Impact factor: 16.971

6.  Point mutations identify the conserved, intron-contained TACTAAC box as an essential splicing signal sequence in yeast.

Authors:  C J Langford; F J Klinz; C Donath; D Gallwitz
Journal:  Cell       Date:  1984-03       Impact factor: 41.582

7.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

8.  Transformation of intact yeast cells treated with alkali cations.

Authors:  H Ito; Y Fukuda; K Murata; A Kimura
Journal:  J Bacteriol       Date:  1983-01       Impact factor: 3.490

9.  Cycloheximide resistance in yeast: the gene and its protein.

Authors:  N F Käufer; H M Fried; W F Schwindinger; M Jasin; J R Warner
Journal:  Nucleic Acids Res       Date:  1983-05-25       Impact factor: 16.971

10.  Synthetic donor and acceptor splice sites function in an RNA polymerase B (II) transcription unit.

Authors:  G Rautmann; H W Matthes; M J Gait; R Breathnach
Journal:  EMBO J       Date:  1984-09       Impact factor: 11.598

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  21 in total

1.  A computational analysis of sequence features involved in recognition of short introns.

Authors:  L P Lim; C B Burge
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

2.  Activation of a cryptic 5' splice site by U1 snRNA.

Authors:  C J Alvarez; J A Wise
Journal:  RNA       Date:  2001-03       Impact factor: 4.942

3.  Evidence for splice site pairing via intron definition in Schizosaccharomyces pombe.

Authors:  C M Romfo; C J Alvarez; W J van Heeckeren; C J Webb; J A Wise
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

4.  prp4 from Schizosaccharomyces pombe, a mutant deficient in pre-mRNA splicing isolated using genes containing artificial introns.

Authors:  G H Rosenberg; S K Alahari; N F Käufer
Journal:  Mol Gen Genet       Date:  1991-04

5.  Beta-globin transcripts carrying a single intron with three adjacent nucleotides of 5' exon are efficiently spliced in vitro irrespective of intron position or surrounding exon sequences.

Authors:  A Mayeda; Y Ohshima
Journal:  Nucleic Acids Res       Date:  1990-08-25       Impact factor: 16.971

6.  Definition of transcriptional pause elements in fission yeast.

Authors:  A Aranda; N J Proudfoot
Journal:  Mol Cell Biol       Date:  1999-02       Impact factor: 4.272

7.  The application of a homologous recombination assay revealed amino acid residues in an LTR-retrotransposon that were critical for integration.

Authors:  A Atwood; J Choi; H L Levin
Journal:  J Virol       Date:  1998-02       Impact factor: 5.103

8.  spp42, identified as a classical suppressor of prp4-73, which encodes a kinase involved in pre-mRNA splicing in fission yeast, is a homologue of the splicing factor Prp8p.

Authors:  H Schmidt; K Richert; R A Drakas; N F Käufer
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

9.  Functional analysis of the fission yeast Prp4 protein kinase involved in pre-mRNA splicing and isolation of a putative mammalian homologue.

Authors:  T Gross; M Lützelberger; H Weigmann; A Klingenhoff; S Shenoy; N F Käufer
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

10.  Fission yeast gene structure and recognition.

Authors:  M Q Zhang; T G Marr
Journal:  Nucleic Acids Res       Date:  1994-05-11       Impact factor: 16.971

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