Literature DB >> 27249346

Plant synthetic biology for molecular engineering of signalling and development.

Jennifer L Nemhauser1, Keiko U Torii1,2,3.   

Abstract

Molecular genetic studies of model plants in the past few decades have identified many key genes and pathways controlling development, metabolism and environmental responses. Recent technological and informatics advances have led to unprecedented volumes of data that may uncover underlying principles of plants as biological systems. The newly emerged discipline of synthetic biology and related molecular engineering approaches is built on this strong foundation. Today, plant regulatory pathways can be reconstituted in heterologous organisms to identify and manipulate parameters influencing signalling outputs. Moreover, regulatory circuits that include receptors, ligands, signal transduction components, epigenetic machinery and molecular motors can be engineered and introduced into plants to create novel traits in a predictive manner. Here, we provide a brief history of plant synthetic biology and significant recent examples of this approach, focusing on how knowledge generated by the reference plant Arabidopsis thaliana has contributed to the rapid rise of this new discipline, and discuss potential future directions.

Entities:  

Mesh:

Year:  2016        PMID: 27249346      PMCID: PMC5164986          DOI: 10.1038/nplants.2016.10

Source DB:  PubMed          Journal:  Nat Plants        ISSN: 2055-0278            Impact factor:   15.793


  94 in total

Review 1.  Improved biocatalysts by directed evolution and rational protein design.

Authors:  U T Bornscheuer; M Pohl
Journal:  Curr Opin Chem Biol       Date:  2001-04       Impact factor: 8.822

2.  Auxin-induced degradation dynamics set the pace for lateral root development.

Authors:  Jessica M Guseman; Antje Hellmuth; Amy Lanctot; Tamar P Feldman; Britney L Moss; Eric Klavins; Luz Irina A Calderón Villalobos; Jennifer L Nemhauser
Journal:  Development       Date:  2015-01-29       Impact factor: 6.868

3.  Dynamic modeling of cellular populations within iBioSim.

Authors:  Jason T Stevens; Chris J Myers
Journal:  ACS Synth Biol       Date:  2012-11-29       Impact factor: 5.110

4.  Production of Δ9-tetrahydrocannabinolic acid from cannabigerolic acid by whole cells of Pichia (Komagataella) pastoris expressing Δ9-tetrahydrocannabinolic acid synthase from Cannabis sativa L.

Authors:  Bastian Zirpel; Felix Stehle; Oliver Kayser
Journal:  Biotechnol Lett       Date:  2015-05-21       Impact factor: 2.461

5.  A computational method for automated characterization of genetic components.

Authors:  Boyan Yordanov; Neil Dalchau; Paul K Grant; Michael Pedersen; Stephen Emmott; Jim Haseloff; Andrew Phillips
Journal:  ACS Synth Biol       Date:  2014-03-14       Impact factor: 5.110

6.  Designed abscisic acid analogs as antagonists of PYL-PP2C receptor interactions.

Authors:  Jun Takeuchi; Masanori Okamoto; Tomonori Akiyama; Takuya Muto; Shunsuke Yajima; Masayuki Sue; Mitsunori Seo; Yuri Kanno; Tsunashi Kamo; Akira Endo; Eiji Nambara; Nobuhiro Hirai; Toshiyuki Ohnishi; Sean R Cutler; Yasushi Todoroki
Journal:  Nat Chem Biol       Date:  2014-05-04       Impact factor: 15.040

7.  DNA replicons for plant genome engineering.

Authors:  Nicholas J Baltes; Javier Gil-Humanes; Tomas Cermak; Paul A Atkins; Daniel F Voytas
Journal:  Plant Cell       Date:  2014-01-17       Impact factor: 11.277

8.  Enhanced metabolism of halogenated hydrocarbons in transgenic plants containing mammalian cytochrome P450 2E1.

Authors:  S L Doty; T Q Shang; A M Wilson; J Tangen; A D Westergreen; L A Newman; S E Strand; M P Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

9.  Agrochemical control of plant water use using engineered abscisic acid receptors.

Authors:  Sang-Youl Park; Francis C Peterson; Assaf Mosquna; Jin Yao; Brian F Volkman; Sean R Cutler
Journal:  Nature       Date:  2015-02-04       Impact factor: 49.962

10.  Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.

Authors:  Sang-Youl Park; Pauline Fung; Noriyuki Nishimura; Davin R Jensen; Hiroaki Fujii; Yang Zhao; Shelley Lumba; Julia Santiago; Americo Rodrigues; Tsz-Fung F Chow; Simon E Alfred; Dario Bonetta; Ruth Finkelstein; Nicholas J Provart; Darrell Desveaux; Pedro L Rodriguez; Peter McCourt; Jian-Kang Zhu; Julian I Schroeder; Brian F Volkman; Sean R Cutler
Journal:  Science       Date:  2009-04-30       Impact factor: 47.728

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  21 in total

Review 1.  Stomatal Development and Perspectives toward Agricultural Improvement.

Authors:  Hitoshi Endo; Keiko U Torii
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

Review 2.  Plant Chemical Genetics: From Phenotype-Based Screens to Synthetic Biology.

Authors:  Wim Dejonghe; Eugenia Russinova
Journal:  Plant Physiol       Date:  2017-03-08       Impact factor: 8.340

3.  ABA Accumulation in Dehydrating Leaves Is Associated with Decline in Cell Volume, Not Turgor Pressure.

Authors:  Lawren Sack; Grace P John; Thomas N Buckley
Journal:  Plant Physiol       Date:  2017-10-23       Impact factor: 8.340

4.  Synthetic Bistability and Differentiation in Yeast.

Authors:  Yaoyu Yang; Jennifer L Nemhauser; Eric Klavins
Journal:  ACS Synth Biol       Date:  2019-05-01       Impact factor: 5.110

5.  Opening new avenues for plant developmental research.

Authors:  Yuki Kondo; Shigeo S Sugano
Journal:  J Plant Res       Date:  2017-12-04       Impact factor: 2.629

Review 6.  CRISPR gene editing of major domestication traits accelerating breeding for Solanaceae crops improvement.

Authors:  Fazal Rehman; Haiguang Gong; Yufei Bao; Shaohua Zeng; Hongwen Huang; Ying Wang
Journal:  Plant Mol Biol       Date:  2022-01-15       Impact factor: 4.076

7.  The Emergence of Genome Editing-Innovation Network Dynamics of Academic Publications, Patents, and Business Activities.

Authors:  Natalie Laibach; Stefanie Bröring
Journal:  Front Bioeng Biotechnol       Date:  2022-04-14

Review 8.  Synthetic Biology in Plants, a Boon for Coming Decades.

Authors:  Dipinte Gupta; Gauri Sharma; Pooja Saraswat; Rajiv Ranjan
Journal:  Mol Biotechnol       Date:  2021-08-21       Impact factor: 2.695

Review 9.  Endophytes: the novel sources for plant terpenoid biosynthesis.

Authors:  Yachao Chen; Bing Hu; Jianmin Xing; Chun Li
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-28       Impact factor: 4.813

10.  RNA Viral Vectors for Accelerating Plant Synthetic Biology.

Authors:  Arjun Khakhar; Daniel F Voytas
Journal:  Front Plant Sci       Date:  2021-06-23       Impact factor: 5.753

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