Literature DB >> 27230909

LncRNAs, lost in translation or licence to regulate?

Alvaro de Andres-Pablo1, Antonin Morillon2, Maxime Wery1.   

Abstract

Over the last decade, advances in transcriptomics have revealed that the pervasive transcription of eukaryotic genomes produces plethora of long noncoding RNAs (lncRNAs), which are now recognized as major regulators of multiple cellular processes. Although they have been thought to lack any protein-coding potential, recent ribosome-profiling data indicate that lncRNAs can interact with the translation machinery, leading to the production of functional peptides in some cases. In this perspective, we have explored the idea that translation can be part of the fate of cytoplasmic lncRNAs, raising the possibility for them to work as bifunctional RNAs, endowed with dual coding and regulatory functions.

Keywords:  LncRNA; Non-coding genome; RNA decay; Regulatory RNA; Transcription; Translation

Mesh:

Substances:

Year:  2016        PMID: 27230909     DOI: 10.1007/s00294-016-0615-1

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  35 in total

1.  Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance.

Authors:  D Muhlrad; R Parker
Journal:  RNA       Date:  1999-10       Impact factor: 4.942

2.  Cytoplasmic Control of Sense-Antisense mRNA Pairs.

Authors:  Flore Sinturel; Albertas Navickas; Maxime Wery; Marc Descrimes; Antonin Morillon; Claire Torchet; Lionel Benard
Journal:  Cell Rep       Date:  2015-09-03       Impact factor: 9.423

Review 3.  Pervasive transcription constitutes a new level of eukaryotic genome regulation.

Authors:  Julia Berretta; Antonin Morillon
Journal:  EMBO Rep       Date:  2009-08-14       Impact factor: 8.807

Review 4.  Non-coding RNAs: regulators of disease.

Authors:  Ryan J Taft; Ken C Pang; Timothy R Mercer; Marcel Dinger; John S Mattick
Journal:  J Pathol       Date:  2010-01       Impact factor: 7.996

5.  XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

Authors:  E L van Dijk; C L Chen; Y d'Aubenton-Carafa; S Gourvennec; M Kwapisz; V Roche; C Bertrand; M Silvain; P Legoix-Né; S Loeillet; A Nicolas; C Thermes; A Morillon
Journal:  Nature       Date:  2011-06-22       Impact factor: 49.962

6.  Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.

Authors:  Joseph V Geisberg; Zarmik Moqtaderi; Xiaochun Fan; Fatih Ozsolak; Kevin Struhl
Journal:  Cell       Date:  2014-02-13       Impact factor: 41.582

7.  Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins.

Authors:  Mitchell Guttman; Pamela Russell; Nicholas T Ingolia; Jonathan S Weissman; Eric S Lander
Journal:  Cell       Date:  2013-06-27       Impact factor: 41.582

8.  Regulation of nonsense-mediated mRNA decay: implications for physiology and disease.

Authors:  Rachid Karam; Jordan Wengrod; Lawrence B Gardner; Miles F Wilkinson
Journal:  Biochim Biophys Acta       Date:  2013-03-13

9.  Bidirectional promoters generate pervasive transcription in yeast.

Authors:  Zhenyu Xu; Wu Wei; Julien Gagneur; Fabiana Perocchi; Sandra Clauder-Münster; Jurgi Camblong; Elisa Guffanti; Françoise Stutz; Wolfgang Huber; Lars M Steinmetz
Journal:  Nature       Date:  2009-01-25       Impact factor: 49.962

Review 10.  Non-coding transcription by RNA polymerase II in yeast: Hasard or nécessité?

Authors:  Agnieszka Tudek; Tito Candelli; Domenico Libri
Journal:  Biochimie       Date:  2015-05-06       Impact factor: 4.079

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  15 in total

1.  LncRNA NORAD is repressed by the YAP pathway and suppresses lung and breast cancer metastasis by sequestering S100P.

Authors:  Boon-Shing Tan; Min-Chi Yang; Shaifali Singh; Yu-Chi Chou; Hsin-Yi Chen; Ming-Yang Wang; Yi-Ching Wang; Ruey-Hwa Chen
Journal:  Oncogene       Date:  2019-04-09       Impact factor: 9.867

Review 2.  Noncoding RNAs Controlling Telomere Homeostasis in Senescence and Aging.

Authors:  Martina Rossi; Myriam Gorospe
Journal:  Trends Mol Med       Date:  2020-02-28       Impact factor: 11.951

3.  Long noncoding RNAs shape transcription in plants.

Authors:  Leandro Lucero; Camille Fonouni-Farde; Martin Crespi; Federico Ariel
Journal:  Transcription       Date:  2020-05-14

4.  Increased miR-21a provides metabolic advantages through suppression of FBP1 expression in non-small cell lung cancer cells.

Authors:  Qingchun Dai; Na Li; Xiaohong Zhou
Journal:  Am J Cancer Res       Date:  2017-11-01       Impact factor: 6.166

Review 5.  DNA methylation: conducting the orchestra from exposure to phenotype?

Authors:  Fleur A D Leenen; Claude P Muller; Jonathan D Turner
Journal:  Clin Epigenetics       Date:  2016-09-06       Impact factor: 6.551

6.  Upregulation of LncRNA-HIT promotes migration and invasion of non-small cell lung cancer cells by association with ZEB1.

Authors:  Xiaojing Jia; Zhicheng Wang; Ling Qiu; Yanming Yang; Yunlong Wang; Zhishen Chen; Zhongshan Liu; Lei Yu
Journal:  Cancer Med       Date:  2016-10-27       Impact factor: 4.452

7.  Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast.

Authors:  Sophie R Atkinson; Samuel Marguerat; Danny A Bitton; Maria Rodríguez-López; Charalampos Rallis; Jean-François Lemay; Cristina Cotobal; Michal Malecki; Pawel Smialowski; Juan Mata; Philipp Korber; François Bachand; Jürg Bähler
Journal:  RNA       Date:  2018-06-18       Impact factor: 4.942

Review 8.  The Roles Played by Long Non-Coding RNAs in Glioma Resistance.

Authors:  Yeonsoo Chae; Jungwook Roh; Wanyeon Kim
Journal:  Int J Mol Sci       Date:  2021-06-25       Impact factor: 5.923

9.  Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis.

Authors:  Vladimir Bidnenko; Pierre Nicolas; Aleksandra Grylak-Mielnicka; Olivier Delumeau; Sandrine Auger; Anne Aucouturier; Cyprien Guerin; Francis Repoila; Jacek Bardowski; Stéphane Aymerich; Elena Bidnenko
Journal:  PLoS Genet       Date:  2017-07-19       Impact factor: 5.917

10.  Telomerase RNA recruits RNA polymerase II to target gene promoters to enhance myelopoiesis.

Authors:  Jesús García-Castillo; Francisca Alcaraz-Pérez; Elena Martínez-Balsalobre; Diana García-Moreno; Marlies P Rossmann; Miriam Fernández-Lajarín; Manuel Bernabé-García; Ana B Pérez-Oliva; Virginia C Rodríguez-Cortez; Clara Bueno; Isaac Adatto; Suneet Agarwal; Pablo Menéndez; Leonard I Zon; Victoriano Mulero; María L Cayuela
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-10       Impact factor: 11.205

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