Literature DB >> 23500037

Regulation of nonsense-mediated mRNA decay: implications for physiology and disease.

Rachid Karam1, Jordan Wengrod, Lawrence B Gardner, Miles F Wilkinson.   

Abstract

Nonsense-mediated mRNA decay (NMD) is an mRNA quality control mechanism that destabilizes aberrant mRNAs harboring premature termination (nonsense) codons (PTCs). Recent studies have shown that NMD also targets mRNAs transcribed from a large subset of wild-type genes. This raises the possibility that NMD itself is under regulatory control. Indeed, several recent studies have shown that NMD activity is modulated in specific cell types and that key components of the NMD pathway are regulated by several pathways, including microRNA circuits and NMD itself. Cellular stress also modulates the magnitude of NMD by mechanisms that are beginning to be understood. Here, we review the evidence that NMD is regulated and discuss the physiological role for this regulation. We propose that the efficiency of NMD is altered in some cellular contexts to regulate normal biological events. In disease states-such as in cancer-NMD is disturbed by intrinsic and extrinsic factors, resulting in altered levels of crucial NMD-targeted mRNAs that lead to downstream pathological consequences. This article is part of a Special Issue entitled: RNA Decay mechanisms.
Copyright © 2013 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23500037      PMCID: PMC3660545          DOI: 10.1016/j.bbagrm.2013.03.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  91 in total

1.  SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAs.

Authors:  A Sureau; R Gattoni; Y Dooghe; J Stévenin; J Soret
Journal:  EMBO J       Date:  2001-04-02       Impact factor: 11.598

2.  Mutant BRCA1 genes antagonize phenotype of wild-type BRCA1.

Authors:  S Fan; R Yuan; Y X Ma; Q Meng; I D Goldberg; E M Rosen
Journal:  Oncogene       Date:  2001-12-13       Impact factor: 9.867

3.  The nonsense-mediated mRNA decay pathway triggers degradation of most BRCA1 mRNAs bearing premature termination codons.

Authors:  Laure Perrin-Vidoz; Olga M Sinilnikova; Dominique Stoppa-Lyonnet; Gilbert M Lenoir; Sylvie Mazoyer
Journal:  Hum Mol Genet       Date:  2002-11-01       Impact factor: 6.150

Review 4.  Nonsense-mediated decay approaches the clinic.

Authors:  Jill A Holbrook; Gabriele Neu-Yilik; Matthias W Hentze; Andreas E Kulozik
Journal:  Nat Genet       Date:  2004-08       Impact factor: 38.330

5.  TARPP, a novel protein that accompanies TCR gene rearrangement and thymocyte education.

Authors:  J Kisielow; A C Nairn; K Karjalainen
Journal:  Eur J Immunol       Date:  2001-04       Impact factor: 5.532

6.  An integrated stress response regulates amino acid metabolism and resistance to oxidative stress.

Authors:  Heather P Harding; Yuhong Zhang; Huiquing Zeng; Isabel Novoa; Phoebe D Lu; Marcella Calfon; Navid Sadri; Chi Yun; Brian Popko; Richard Paules; David F Stojdl; John C Bell; Thore Hettmann; Jeffrey M Leiden; David Ron
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

7.  Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay.

Authors:  Matthew C Wollerton; Clare Gooding; Eric J Wagner; Mariano A Garcia-Blanco; Christopher W J Smith
Journal:  Mol Cell       Date:  2004-01-16       Impact factor: 17.970

8.  Inhibition of nonsense-mediated mRNA decay rescues the phenotype in Ullrich's disease.

Authors:  Fusako Usuki; Akio Yamashita; Itsuro Higuchi; Tetsuo Ohnishi; Tadafumi Shiraishi; Mitsuhiro Osame; Shigeo Ohno
Journal:  Ann Neurol       Date:  2004-05       Impact factor: 10.422

9.  The GCN2 eIF2alpha kinase is required for adaptation to amino acid deprivation in mice.

Authors:  Peichuan Zhang; Barbara C McGrath; Jamie Reinert; DeAnne S Olsen; Li Lei; Sangeeta Gill; Sheree A Wek; Krishna M Vattem; Ronald C Wek; Scot R Kimball; Leonard S Jefferson; Douglas R Cavener
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

10.  Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation.

Authors:  Lorenzo F Sempere; Sarah Freemantle; Ian Pitha-Rowe; Eric Moss; Ethan Dmitrovsky; Victor Ambros
Journal:  Genome Biol       Date:  2004-02-16       Impact factor: 13.583

View more
  67 in total

1.  In vitro analysis of splice site mutations in the CLCN1 gene using the minigene assay.

Authors:  Gianna Ulzi; Valeria A Sansone; Francesca Magri; Stefania Corti; Nereo Bresolin; Giacomo P Comi; Sabrina Lucchiari
Journal:  Mol Biol Rep       Date:  2014-01-23       Impact factor: 2.316

2.  Induced transcription and stability of CELF2 mRNA drives widespread alternative splicing during T-cell signaling.

Authors:  Michael J Mallory; Samuel J Allon; Jinsong Qiu; Matthew R Gazzara; Iulia Tapescu; Nicole M Martinez; Xiang-Dong Fu; Kristen W Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-13       Impact factor: 11.205

3.  Control of mRNA Stability in Fungi by NMD, EJC and CBC Factors Through 3'UTR Introns.

Authors:  Ying Zhang; Matthew S Sachs
Journal:  Genetics       Date:  2015-06-04       Impact factor: 4.562

4.  RNA metabolism: putting the brake on the UPR.

Authors:  Amado Carreras-Sureda; Claudio Hetz
Journal:  EMBO Rep       Date:  2015-03-25       Impact factor: 8.807

5.  The unfolded protein response is shaped by the NMD pathway.

Authors:  Rachid Karam; Chih-Hong Lou; Heike Kroeger; Lulu Huang; Jonathan H Lin; Miles F Wilkinson
Journal:  EMBO Rep       Date:  2015-03-25       Impact factor: 8.807

6.  Caspases shutdown nonsense-mediated mRNA decay during apoptosis.

Authors:  J Jia; A Furlan; S Gonzalez-Hilarion; C Leroy; D C Gruenert; D Tulasne; F Lejeune
Journal:  Cell Death Differ       Date:  2015-03-06       Impact factor: 15.828

Review 7.  RNA decay, evolution, and the testis.

Authors:  Samantha H Jones; Miles Wilkinson
Journal:  RNA Biol       Date:  2016-12-02       Impact factor: 4.652

8.  Frameshift Mutations of SMG7 Essential for Nonsense-Mediated mRNA Decay in Gastric and Colorectal Cancers.

Authors:  Yun Sol Jo; Sang Yong Song; Min Sung Kim; Nam Jin Yoo; Sug Hyung Lee
Journal:  Pathol Oncol Res       Date:  2016-10-22       Impact factor: 3.201

9.  Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.

Authors:  Lisa Hartmann; Philipp Drewe-Boß; Theresa Wießner; Gabriele Wagner; Sascha Geue; Hsin-Chieh Lee; Dominik M Obermüller; André Kahles; Jonas Behr; Fabian H Sinz; Gunnar Rätsch; Andreas Wachter
Journal:  Plant Cell       Date:  2016-11-01       Impact factor: 11.277

10.  Posttranscriptional control of the stem cell and neurogenic programs by the nonsense-mediated RNA decay pathway.

Authors:  Chih H Lou; Ada Shao; Eleen Y Shum; Josh L Espinoza; Lulu Huang; Rachid Karam; Miles F Wilkinson
Journal:  Cell Rep       Date:  2014-02-13       Impact factor: 9.423

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.