Literature DB >> 27226977

Invasive ductal breast carcinoma detector that is robust to image magnification in whole digital slides.

Matthew Balazsi1, Paula Blanco2, Pablo Zoroquiain2, Martin D Levine3, Miguel N Burnier2.   

Abstract

Invasive ductal breast carcinomas (IDBCs) are the most frequent and aggressive subtypes of breast cancer, affecting a large number of Canadian women every year. Part of the diagnostic process includes grading the cancerous tissue at the microscopic level according to the Nottingham modification of the Scarff-Bloom-Richardson system. Although reliable, there exists a growing interest in automating the grading process, which will provide consistent care for all patients. This paper presents a solution for automatically detecting regions expressing IDBC in images of microscopic tissue, or whole digital slides. This represents the first stage in a larger solution designed to automatically grade IDBC. The detector first tessellated whole digital slides, and image features were extracted, such as color information, local binary patterns, and histograms of oriented gradients. These were presented to a random forest classifier, which was trained and tested using a database of 66 cases diagnosed with IDBC. When properly tuned, the detector balanced accuracy, F1 score, and Dice's similarity coefficient were 88.7%, 79.5%, and 0.69, respectively. Overall, the results seemed strong enough to integrate our detector into a larger solution equipped with components that analyze the cancerous tissue at higher magnification, automatically producing the histopathological grade.

Entities:  

Keywords:  cancer; computer vision; histopathology; invasive ductal breast carcinoma; machine learning; whole digital slides

Year:  2016        PMID: 27226977      PMCID: PMC4870400          DOI: 10.1117/1.JMI.3.2.027501

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  18 in total

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7.  Prognostic significance of Nottingham histologic grade in invasive breast carcinoma.

Authors:  Emad A Rakha; Maysa E El-Sayed; Andrew H S Lee; Christopher W Elston; Matthew J Grainge; Zsolt Hodi; Roger W Blamey; Ian O Ellis
Journal:  J Clin Oncol       Date:  2008-05-19       Impact factor: 44.544

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Authors:  Ju Han; Kai-Kuang Ma
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Authors:  Grazia Arpino; Valerie J Bardou; Gary M Clark; Richard M Elledge
Journal:  Breast Cancer Res       Date:  2004-02-17       Impact factor: 6.466

10.  Assessing agreement between multiple raters with missing rating information, applied to breast cancer tumour grading.

Authors:  Thomas R Fanshawe; Andrew G Lynch; Ian O Ellis; Andrew R Green; Rudolf Hanka
Journal:  PLoS One       Date:  2008-08-13       Impact factor: 3.240

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  3 in total

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