Literature DB >> 27211472

Correction for diffusion MRI fibre tracking biases: The consequences for structural connectomic metrics.

Chun-Hung Yeh1, Robert E Smith2, Xiaoyun Liang2, Fernando Calamante3, Alan Connelly3.   

Abstract

Diffusion MRI streamlines tractography has become a major technique for inferring structural networks through reconstruction of brain connectome. However, quantification of structural connectivity based on the number of streamlines interconnecting brain grey matter regions is known to be problematic in a number of aspects, such as the ill-posed nature of streamlines terminations and the non-quantitative nature of streamline counts. This study investigates the effects of state-of-the-art connectome construction methods on the subsequent analyses of structural brain networks using graph theoretical approaches. Our results demonstrate that the characteristics of structural connectivity, including connectome variability, global network metrics, small-world attributes and network hubs, alter significantly following the improvement in biological accuracy of streamlines tractograms provided by anatomically-constrained tractography (ACT) and spherical-deconvolution informed filtering of tractograms (SIFT). Importantly, the commonly-used correction for connection density based on scaling the contribution of each streamline to the connectome by its inverse length is shown to provide incomplete correction, highlighting the necessity for the use of advanced tractogram reconstruction techniques in structural connectomics research.
Copyright © 2016 Elsevier Inc. All rights reserved.

Keywords:  Diffusion MRI; Fibre-tracking; Network metrics; Structural connectome; Tractography

Mesh:

Year:  2016        PMID: 27211472     DOI: 10.1016/j.neuroimage.2016.05.047

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  24 in total

1.  Anatomical accuracy of standard-practice tractography algorithms in the motor system - A histological validation in the squirrel monkey brain.

Authors:  Kurt G Schilling; Yurui Gao; Iwona Stepniewska; Vaibhav Janve; Bennett A Landman; Adam W Anderson
Journal:  Magn Reson Imaging       Date:  2018-09-10       Impact factor: 2.546

Review 2.  Advances in computational and statistical diffusion MRI.

Authors:  Lauren J O'Donnell; Alessandro Daducci; Demian Wassermann; Christophe Lenglet
Journal:  NMR Biomed       Date:  2017-11-14       Impact factor: 4.044

3.  Influence of structural and functional brain connectivity on age-related differences in fluid cognition.

Authors:  David J Madden; Shivangi Jain; Zachary A Monge; Angela D Cook; Alexander Lee; Hua Huang; Cortney M Howard; Jessica R Cohen
Journal:  Neurobiol Aging       Date:  2020-09-12       Impact factor: 4.673

4.  Impaired rich club and increased local connectivity in children with traumatic brain injury: Local support for the rich?

Authors:  Helena Verhelst; Catharine Vander Linden; Toon De Pauw; Guy Vingerhoets; Karen Caeyenberghs
Journal:  Hum Brain Mapp       Date:  2018-03-12       Impact factor: 5.038

5.  Tracking and validation techniques for topographically organized tractography.

Authors:  Dogu Baran Aydogan; Yonggang Shi
Journal:  Neuroimage       Date:  2018-07-02       Impact factor: 6.556

6.  When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity.

Authors:  Dogu Baran Aydogan; Russell Jacobs; Stephanie Dulawa; Summer L Thompson; Maite Christi Francois; Arthur W Toga; Hongwei Dong; James A Knowles; Yonggang Shi
Journal:  Brain Struct Funct       Date:  2018-04-16       Impact factor: 3.270

Review 7.  Emerging Frontiers of Neuroengineering: A Network Science of Brain Connectivity.

Authors:  Danielle S Bassett; Ankit N Khambhati; Scott T Grafton
Journal:  Annu Rev Biomed Eng       Date:  2017-03-27       Impact factor: 9.590

8.  Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?

Authors:  Kurt G Schilling; François Rheault; Laurent Petit; Colin B Hansen; Vishwesh Nath; Fang-Cheng Yeh; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Elda Fischi-Gomez; Marco Pizzolato; Mario Ocampo-Pineda; Simona Schiavi; Erick J Canales-Rodríguez; Alessandro Daducci; Cristina Granziera; Giorgio Innocenti; Jean-Philippe Thiran; Laura Mancini; Stephen Wastling; Sirio Cocozza; Maria Petracca; Giuseppe Pontillo; Matteo Mancini; Sjoerd B Vos; Vejay N Vakharia; John S Duncan; Helena Melero; Lidia Manzanedo; Emilio Sanz-Morales; Ángel Peña-Melián; Fernando Calamante; Arnaud Attyé; Ryan P Cabeen; Laura Korobova; Arthur W Toga; Anupa Ambili Vijayakumari; Drew Parker; Ragini Verma; Ahmed Radwan; Stefan Sunaert; Louise Emsell; Alberto De Luca; Alexander Leemans; Claude J Bajada; Hamied Haroon; Hojjatollah Azadbakht; Maxime Chamberland; Sila Genc; Chantal M W Tax; Ping-Hong Yeh; Rujirutana Srikanchana; Colin D Mcknight; Joseph Yuan-Mou Yang; Jian Chen; Claire E Kelly; Chun-Hung Yeh; Jerome Cochereau; Jerome J Maller; Thomas Welton; Fabien Almairac; Kiran K Seunarine; Chris A Clark; Fan Zhang; Nikos Makris; Alexandra Golby; Yogesh Rathi; Lauren J O'Donnell; Yihao Xia; Dogu Baran Aydogan; Yonggang Shi; Francisco Guerreiro Fernandes; Mathijs Raemaekers; Shaun Warrington; Stijn Michielse; Alonso Ramírez-Manzanares; Luis Concha; Ramón Aranda; Mariano Rivera Meraz; Garikoitz Lerma-Usabiaga; Lucas Roitman; Lucius S Fekonja; Navona Calarco; Michael Joseph; Hajer Nakua; Aristotle N Voineskos; Philippe Karan; Gabrielle Grenier; Jon Haitz Legarreta; Nagesh Adluru; Veena A Nair; Vivek Prabhakaran; Andrew L Alexander; Koji Kamagata; Yuya Saito; Wataru Uchida; Christina Andica; Masahiro Abe; Roza G Bayrak; Claudia A M Gandini Wheeler-Kingshott; Egidio D'Angelo; Fulvia Palesi; Giovanni Savini; Nicolò Rolandi; Pamela Guevara; Josselin Houenou; Narciso López-López; Jean-François Mangin; Cyril Poupon; Claudio Román; Andrea Vázquez; Chiara Maffei; Mavilde Arantes; José Paulo Andrade; Susana Maria Silva; Vince D Calhoun; Eduardo Caverzasi; Simone Sacco; Michael Lauricella; Franco Pestilli; Daniel Bullock; Yang Zhan; Edith Brignoni-Perez; Catherine Lebel; Jess E Reynolds; Igor Nestrasil; René Labounek; Christophe Lenglet; Amy Paulson; Stefania Aulicka; Sarah R Heilbronner; Katja Heuer; Bramsh Qamar Chandio; Javier Guaje; Wei Tang; Eleftherios Garyfallidis; Rajikha Raja; Adam W Anderson; Bennett A Landman; Maxime Descoteaux
Journal:  Neuroimage       Date:  2021-08-22       Impact factor: 7.400

9.  Confirmation of a gyral bias in diffusion MRI fiber tractography.

Authors:  Kurt Schilling; Yurui Gao; Vaibhav Janve; Iwona Stepniewska; Bennett A Landman; Adam W Anderson
Journal:  Hum Brain Mapp       Date:  2017-12-19       Impact factor: 5.038

10.  Diffusion MRI tractography filtering techniques change the topology of structural connectomes.

Authors:  Matteo Frigo; Samuel Deslauriers-Gauthier; Drew Parker; Abdol Aziz Ould Ismail; Junghoon John Kim; Ragini Verma; Rachid Deriche
Journal:  J Neural Eng       Date:  2020-11-11       Impact factor: 5.379

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