Literature DB >> 2720459

Image analysis of restriction enzyme fingerprint autoradiograms.

J Sulston1, F Mallett, R Durbin, T Horsnell.   

Abstract

A genome mapping system has been developed that reads and assembles data from clones analysed by restriction enzyme fragmentation and polyacrylamide gel electrophoresis. Input data for the system can be most effectively obtained by the use of a scanning densitometer and image-processing package, such as that described in this article. The image-processing procedure involves preliminary location of bands, cooperative tracking of lanes by correlation of adjacent bands, a precise densitometric pass, alignment of the marker bands with the standard, optional interactive editing, and normalization of the accepted bands.

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Year:  1989        PMID: 2720459     DOI: 10.1093/bioinformatics/5.2.101

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  40 in total

1.  A 12-Mb complete coverage BAC contig map in human chromosome 16p13.1-p11.2.

Authors:  Y Cao; H L Kang; X Xu; M Wang; S H Dho; J R Huh; B J Lee; F Kalush; D Bocskai; Y Ding; J G Tesmer; J Lee; E Moon; V Jurecic; A Baldini; H U Weier; N A Doggett; M I Simon; M D Adams; U J Kim
Journal:  Genome Res       Date:  1999-08       Impact factor: 9.043

2.  GenMapDB: a database of mapped human BAC clones.

Authors:  M Morley; M Arcaro; J Burdick; R Yonescu; T Reid; I R Kirsch; V G Cheung
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  A contiguous 3-Mb sequence-ready map in the S3-MX region on 21q22.2 based on high- throughput nonisotopic library screenings.

Authors:  T Hildmann; X Kong; J O'Brien; L Riesselman; H M Christensen; E Dagand; H Lehrach; M L Yaspo
Journal:  Genome Res       Date:  1999-04       Impact factor: 9.043

4.  A BAC-based physical map of the chicken genome.

Authors:  Chengwei Ren; Mi-Kyung Lee; Bo Yan; Kejiao Ding; Bettye Cox; Michael N Romanov; Jennifer A Price; Jerry B Dodgson; Hong-Bin Zhang
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

5.  Software for automated analysis of DNA fingerprinting gels.

Authors:  Daniel R Fuhrmann; Martin I Krzywinski; Readman Chiu; Parvaneh Saeedi; Jacqueline E Schein; Ian E Bosdet; Asif Chinwalla; LaDeana W Hillier; Robert H Waterston; John D McPherson; Steven J M Jones; Marco A Marra
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

6.  Locating sequence on FPC maps and selecting a minimal tiling path.

Authors:  Friedrich W Engler; James Hatfield; William Nelson; Carol A Soderlund
Journal:  Genome Res       Date:  2003-08-12       Impact factor: 9.043

7.  Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses.

Authors:  John E Bowers; Miguel A Arias; Rochelle Asher; Jennifer A Avise; Robert T Ball; Gene A Brewer; Ryan W Buss; Amy H Chen; Thomas M Edwards; James C Estill; Heather E Exum; Valorie H Goff; Kristen L Herrick; Cassie L James Steele; Santhosh Karunakaran; Gmerice K Lafayette; Cornelia Lemke; Barry S Marler; Shelley L Masters; Joana M McMillan; Lisa K Nelson; Graham A Newsome; Chike C Nwakanma; Rosana N Odeh; Cynthia A Phelps; Elizabeth A Rarick; Carl J Rogers; Sean P Ryan; Keimun A Slaughter; Carol A Soderlund; Haibao Tang; Rod A Wing; Andrew H Paterson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-02       Impact factor: 11.205

8.  Catfish CC chemokines: genomic clustering, duplications, and expression after bacterial infection with Edwardsiella ictaluri.

Authors:  Eric Peatman; Baolong Bao; Xu Peng; Puttharat Baoprasertkul; Yolanda Brady; Zhanjiang Liu
Journal:  Mol Genet Genomics       Date:  2005-12-08       Impact factor: 3.291

9.  A physical map of the Leishmania major Friedlin genome.

Authors:  A C Ivens; S M Lewis; A Bagherzadeh; L Zhang; H M Chan; D F Smith
Journal:  Genome Res       Date:  1998-02       Impact factor: 9.043

10.  A bacterial artificial chromosome-based framework contig map of human chromosome 22q.

Authors:  U J Kim; H Shizuya; H L Kang; S S Choi; C L Garrett; L J Smink; B W Birren; J R Korenberg; I Dunham; M I Simon
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

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