Literature DB >> 27178840

Whither Ribosome Structure and Dynamics Research? (A Perspective).

Joachim Frank1.   

Abstract

As high-resolution cryogenic electron microscopy (cryo-EM) structures of ribosomes proliferate, at resolutions that allow atomic interactions to be visualized, this article attempts to give a perspective on the way research on ribosome structure and dynamics may be headed, and particularly the new opportunities we have gained through recent advances in cryo-EM. It is pointed out that single-molecule FRET and cryo-EM form natural complements in the characterization of ribosome dynamics and transitions among equilibrating states of in vitro translational systems.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  cryo-EM; smFRET; time-resolved methods; translation

Mesh:

Year:  2016        PMID: 27178840      PMCID: PMC5010980          DOI: 10.1016/j.jmb.2016.04.034

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  57 in total

1.  tRNA dynamics on the ribosome during translation.

Authors:  Scott C Blanchard; Harold D Kim; Ruben L Gonzalez; Joseph D Puglisi; Steven Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-18       Impact factor: 11.205

2.  Single-molecule study of ribosome hierarchic dynamics at the peptidyl transferase center.

Authors:  Mediha Esra Altuntop; Cindy Tu Ly; Yuhong Wang
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

Review 3.  Two promising future developments of cryo-EM: capturing short-lived states and mapping a continuum of states of a macromolecule.

Authors:  Bo Chen; Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-10-31       Impact factor: 1.571

4.  Spontaneous intersubunit rotation in single ribosomes.

Authors:  Peter V Cornish; Dmitri N Ermolenko; Harry F Noller; Taekjip Ha
Journal:  Mol Cell       Date:  2008-06-06       Impact factor: 17.970

Review 5.  What recent ribosome structures have revealed about the mechanism of translation.

Authors:  T Martin Schmeing; V Ramakrishnan
Journal:  Nature       Date:  2009-10-18       Impact factor: 49.962

6.  Structure of the human 80S ribosome.

Authors:  Heena Khatter; Alexander G Myasnikov; S Kundhavai Natchiar; Bruno P Klaholz
Journal:  Nature       Date:  2015-04-22       Impact factor: 49.962

7.  Initial bridges between two ribosomal subunits are formed within 9.4 milliseconds, as studied by time-resolved cryo-EM.

Authors:  Tanvir R Shaikh; Aymen S Yassin; Zonghuan Lu; David Barnard; Xing Meng; Toh-Ming Lu; Terence Wagenknecht; Rajendra K Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

8.  Analysis of transient structures by cryo-microscopy combined with rapid mixing of spray droplets.

Authors:  J Berriman; N Unwin
Journal:  Ultramicroscopy       Date:  1994-12       Impact factor: 2.689

Review 9.  Structure and dynamics of a processive Brownian motor: the translating ribosome.

Authors:  Joachim Frank; Ruben L Gonzalez
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

10.  Coordinated conformational and compositional dynamics drive ribosome translocation.

Authors:  Jin Chen; Alexey Petrov; Albert Tsai; Seán E O'Leary; Joseph D Puglisi
Journal:  Nat Struct Mol Biol       Date:  2013-04-28       Impact factor: 15.369

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  6 in total

Review 1.  From Atoms to Cells: Using Mesoscale Landscapes to Construct Visual Narratives.

Authors:  David S Goodsell; Margaret A Franzen; Tim Herman
Journal:  J Mol Biol       Date:  2018-06-07       Impact factor: 5.469

Review 2.  The translation elongation cycle-capturing multiple states by cryo-electron microscopy.

Authors:  Joachim Frank
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

Review 3.  Cryo-EM of dynamic protein complexes in eukaryotic DNA replication.

Authors:  Jingchuan Sun; Zuanning Yuan; Lin Bai; Huilin Li
Journal:  Protein Sci       Date:  2016-09-14       Impact factor: 6.725

Review 4.  Dynamics of IRES-mediated translation.

Authors:  Alex G Johnson; Rosslyn Grosely; Alexey N Petrov; Joseph D Puglisi
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

5.  CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.

Authors:  Yu Zhao; Jay Rai; Hongguo Yu; Hong Li
Journal:  Structure       Date:  2022-04-29       Impact factor: 5.871

Review 6.  A guide to large-scale RNA sample preparation.

Authors:  Lorenzo Baronti; Hampus Karlsson; Maja Marušič; Katja Petzold
Journal:  Anal Bioanal Chem       Date:  2018-03-15       Impact factor: 4.142

  6 in total

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