| Literature DB >> 27168970 |
Lucília S Miranda1, Allen G Collins2, Yayoi M Hirano3, Claudia E Mills4, Audrey Falconer5,6, David Fenwick7, Antonio C Marques1,8.
Abstract
Staurozoan classification is highly subjective, based on phylogeny-free inferences, and suborders, families, and genera are commonly defined by homoplasies. Additionally, many characters used in the taxonomy of the group have ontogenetic and intraspecific variation, and demand new and consistent assessments to establish their correct homologies. Consequently, Staurozoa is in need of a thorough systematic revision. The aim of this study is to propose a comprehensive phylogenetic hypothesis for Staurozoa, providing the first phylogenetic classification for the group. According to our working hypothesis based on a combined set of molecular data (mitochondrial markers COI and 16S, and nuclear markers ITS, 18S, and 28S), the traditional suborders Cleistocarpida (animals with claustrum) and Eleutherocarpida (animals without claustrum) are not monophyletic. Instead, our results show that staurozoans are divided into two groups, herein named Amyostaurida and Myostaurida, which can be distinguished by the absence/presence of interradial longitudinal muscles in the peduncle, respectively. We propose a taxonomic revision at the family and genus levels that preserves the monophyly of taxa. We provide a key for staurozoan genera and discuss the evolution of the main characters used in staurozoan taxonomy.Entities:
Keywords: Evolution; Medusozoa; Phylogeny; Stauromedusae; Taxonomy
Year: 2016 PMID: 27168970 PMCID: PMC4860332 DOI: 10.7717/peerj.1951
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Diversity of stalked jellyfishes.
Calvadosia cruxmelitensis: (A) lateral view, (B) oral view (photo credit: David Fenwick); Calvadosia campanulata: (C) lateral view, (D) oral view (photo credit: David Fenwick); Calvadosia nagatensis: (E) oral view (photo credit: Yayoi Hirano); Craterolophus convolvulus: (F, G) lateral view (photo credit: David Fenwick); Depastromorpha africana: (H) lateral view (photo credit: Yayoi Hirano); Haliclystus tenuis: (I) lateral view (photo credit: Yayoi Hirano); Haliclystus borealis: (J) lateral view (photo credit: Yayoi Hirano); Haliclystus octoradiatus: (K) oral view (photo credit: David Fenwick); Haliclystus inabai: (L) lateral view (photo credit: Yayoi Hirano); Kyopoda lamberti: (M) lateral view (photo credit: courtesy of Ronald Shimek); Lipkea sp. Japan: (N) oral view (photo credit: Yayoi Hirano); Stylocoronella riedli: (O) lateral view (proto credit: courtesy of Mat Vestjens and Anne Frijsinger); Lucernaria janetae: (P) lateral and oral views (photo credit: courtesy of Richard Lutz); Manania uchidai: (Q) lateral view (photo credit: Yayoi Hirano); Manania gwilliami: (R) oral view (photo credit: courtesy of Ronald Shimek); Manania handi: (S) lateral view (photo credit: Claudia Mills).
Figure 2General external anatomy of stalked jellyfishes.
Craterolophus convolvulus: (A) lateral view, (B) oral view. Abbreviations: am, arm; cl, calyx; gd, gonad; mn, manubrium; pd, pedal disk; pe, peduncle; tc, tentacle cluster. Photo credit: David Fenwick.
Species used in the phylogenetic analyses (parsimony, maximum likelihood, and Bayesian inference).
Based on mitochondrial molecular markers (COI and 16S) and nuclear molecular markers (ITS, 18S, and 28S).
| Species | Specimens | GenBank accession numbers | Locality | Voucher | ||||
|---|---|---|---|---|---|---|---|---|
| COI | 16S | ITS | 18S | 28S | ||||
| Helgoland, North Sea, Germany | USNM 1073330, 1073339 | |||||||
| – | – | Sennen Cove, Cornwall, England | USNM 1286315 | |||||
| – | Rye Beach, Rye, New Hampshire, USA | MZUSP 002730 | ||||||
| – | – | – | – | Kalk Bay, Cape Town, South Africa | MZUSP 002733 | |||
| – | Kalk Bay, Cape Town, South Africa | MZUSP 002734 | ||||||
| Argentine antarctic station Jubany, King George Island, Antarctica | None | |||||||
| – | Valdivia, Chile | None | ||||||
| – | Muroran, Hokkaido, Japan | USNM 1106650 | ||||||
| Otter Point, Pacific Grove, California, USA | USNM 1106657 | |||||||
| Cornwall, England | USNM 1286385 | |||||||
| San Juan Island, Washington, USA | USNM 1106935 | |||||||
| Daikokujima, Akkeshi, Hokkaido, Japan | KUNHM 002673-B | |||||||
| Muroran, Hokkaido, Japan | USNM 1106651 | |||||||
| – | – | Aracruz, Espirito Santo, Brazil | MZUSP 1563 | |||||
| – | – | – | – | Shimoda, Shizuoka, Japan | USNM 1106985 | |||
| – | Aquarium, Oceanographic Museum of Monaco | USNM 1315313 | ||||||
| – | – | – | – | Aquarium, Oceanographic Museum of Monaco | USNM 1315317 | |||
| – | – | – | Arctic, Mid-Ocean Ridge | USNM 1301002 | ||||
| – | Faroe-Shetland Channel between Faroe and Shetland Islands | USNM 1300113 | ||||||
| – | East Pacific Rise | FMNH 10329 | ||||||
| – | – | – | – | East Pacific Rise | None | |||
| – | – | – | – | Keret Inlet, off Sredny Island, Black Rock, White Sea, Russia | USNM 1106636 | |||
| – | – | Near White Sea Biological Station of Moscow State University, White Sea, Russia | USNM 1102441 | |||||
| – | – | – | – | Near White Sea Biological Station of Moscow State University, White Sea, Russia | USNM 1106245 | |||
| – | Nicolskaya Inlet, off Bolshoy Medvedok Island, Kandalaksha Bay, White Sea, Russia | USNM 1106643 | ||||||
| Battery Rocks, Penzance, Cornwall, England | USNM 1286317 | |||||||
| Penzance, Cornwall, England | USNM 1286321 | |||||||
| – | – | Kitty Miller Bay, Phillip Island, Victoria, Australia | MV F158628 | |||||
| Trinity Island, Palmer Archipelago, Antarctica | USNM 1106658 | |||||||
| – | Monterey Harbor, California, USA | USNM 1106649 | ||||||
| – | – | – | – | Pacific Grove Marine Gardens Park, California, USA | USNM 1106662 | |||
| – | Daikokujima, Akkeshi, Hokkaido, Japan | KUNHM 002673-A | ||||||
| – | Oshoro, Hokkaido, Japan | USNM 1106984 | ||||||
| Oshoro, Hokkaido, Japan | Photo voucher only | |||||||
| Outside Port Fairy, Abalone Farm, Victoria, Australia | MV F197278 | |||||||
| Moorea, French Polynesia | UF:Cnidaria:7226 | |||||||
| Taputeranga Marine Reserve, Wellington, New Zealand | NIWA 86808 | |||||||
| – | – | – | – | Cape Town, South Africa | MZUSP 002731 | |||
| – | Cape Town, South Africa | MZUSP 002732 | ||||||
| Aquarium, Katsuura, Chiba, Japan | USNM 1315325 | |||||||
| – | Aquarium, Katsuura, Chiba, Japan | USNM 1315326 | ||||||
| East Pacific Rise, 20 degrees south | USNM 1086349 | |||||||
| Taputeranga Marine Reserve, Wellington, New Zealand | NIWA 86809 | |||||||
| Williamstown, The Jawbone, Victoria, Australia | MV F190063 | |||||||
Notes:
More than one specimen for each species was used to generate the combined alignment. ANT, Antarctica; AUS, Australia; EPR, East Pacific Rise; GER, Germany; JAP, Japan; NZ, New Zealand; SAF, South Africa; UK, the United Kingdom; USA, the United States of America; FMNH, Field Museum of Natural History, USA; KUNHM, University of Kansas Natural History Museum; MV, Museum Victoria, Australia; MZUSP, Museum of Zoology of the University of São Paulo; NIWA, National Institute of Water and Atmospheric Research; UF, University of Florida Museum of Natural History; USNM, National Museum of Natural History, Smithsonian, USA.
Sequence with less than 200 nucleotides: ACGCCGTGCCAGGCCAAAATGTATTTTGTTACCTGCTGCACGGTGATGCTGAGCGCATTTTCTTTCTTCGTGGGCAAGAAAGAGGTGGTCGATAGATACGAGAGAGAGTGAGAGAGACGCGCGTCGTCCATCTCTCACTGACAATGACCTCAG.
Primer sequences for polymerase chain reaction (PCR) and sequencing reaction.
| Genes | Primers | Sequences | References |
|---|---|---|---|
| COI | jgHCO2198 | TITCIACIAAYCAYAARGAYATTGG | |
| jgLCO1490 | TAIACYTCIGGRTGICCRAARAAYCA | ||
| 16S | F1mod | TCGACTGTTTACCAAAAACATA | |
| R2 | ACGGAATGAACTCAAATCATGTAAG | ||
| rnl_f_jl | GACTGTTTACCAAAGACATAGC | Designed by J. Lawley | |
| rnl_r_jl | AAGATAGAAACCTTCCTGTC | Designed by J. Lawley | |
| ITS | jfITS1–5f | GGTTTCCGTAGGTGAACCTGCGGAAGGATC | |
| CAS28SB1d | TTCTTTTCCTCCSCTTAYTRATATGCTTAA | ||
| C2 | GAAAAGAACTTTGRARAGAGAGT | ||
| D2 | TCCGTGTTTCAAGACGGG | ||
| 18S (SSU) | AF_cnidarian | GTGGYAATTCTAGAGCTAATACATGCG | Designed by R. Wilson |
| BR_cnidarian | GCGACGGGCGGTGTGTAC | Designed by R. Wilson | |
| IF_cnidarian | GGGGGCATYCGTATTTCGTTG | Designed by R. Wilson | |
| IR_cnidarian | CAACGAAATACGRATGCCCCC | Designed by R. Wilson | |
| C_new cnidarian | CAGCCGCGGTAATTCCAGC | Designed by R. Wilson | |
| L_new cnidarian | CCTRTTCCATTATTCCATGCTC | Designed by R. Wilson | |
| O_new cnidarian | GGTCCAGACATAGTAAGGATTG | Designed by R. Wilson | |
| 1800R18S | GTTCACCTACYGAAACCTTGTT | ||
| 28S (LSU) | F63 mod | ACCCGCTGAAYTTAAGCATATHANTMAG | |
| F63sq | AATAAGCGGAGGAAAAGAAAC | ||
| F97 | CCYYAGTAACGGCGAGT | ||
| F635 | CCGTCTTGAAACACGGACC | ||
| F1379sq | GACAGCAGGACGGTGGYCATGG | ||
| F1383 | GGACGGTGGCCATGGAAGT | ||
| F1586 | GTGCAGATCTTGGTDGNAGTAGCAAATATTC | ||
| F1689 | CTAAGMSRYAGGGAAAYTC | ||
| F2076sq | TAACYTCGGGAWAAGGATTGGCTC | ||
| F2766sq | AGTTTGGCTGGGGCGGYACA | ||
| F2800 | GCAGGTGTCCTAAGGYRAGCTC | ||
| R635sq | GGTCCGTGTTTCAAGACGG | ||
| R1411sq | GTTGTTACACACTCCTTAGCGG | ||
| R1630 | CCYTTCYCCWCTCRGYCTTC | ||
| R2077sq | GAGCCAATCCTTWTCCCGARGTT | ||
| R2084 | AGAGCCAATCCTTTTCC | ||
| R2766sq | CAGRTGTRCCGCCCCAGCCAAACT | ||
| R2800 | GAGCTYRCCTTAGGACACCTGC | ||
| R3238 | SWACAGATGGTAGCTTCG | ||
| R3264 | TTCYGACTTAGAGGCGTTCAG |
Polymerase chain reaction (PCR) conditions for the different molecular markers used in the phylogenetic analyses.
| Molecular marker | PCR condition |
|---|---|
| COI | 94 °C: 5 min |
| 35 × −94 °C: 30 s; 50 °C: 40 s; 72 °C: 1 min | |
| 72 °C: 7 min | |
| 4 °C: forever | |
| 16S | 95 °C: 5 min |
| 35 × −95 °C: 30 s; 45 °C: 50 s; 72 °C: 1 min | |
| 72 °C: 5 min | |
| 4 °C: forever | |
| ITS | 94 °C: 5 min |
| 35 × −94 °C: 30 s; 60 °C: 40 s; 72 °C: 1 min | |
| 72 °C: 10 min | |
| 4 °C: forever | |
| 18S (SSU) | 94 °C: 5 min |
| 35 × −94 °C: 30 s; 57 °C: 30 s; 72 °C: 1 min | |
| 72 °C: 7 min | |
| 4 °C: forever | |
| 28S (LSU) | 94 °C: 3 min |
| 35 × −95 °C: 30 s; 55 °C: 45 s; 72 °C: 1 min | |
| 72 °C: 7 min | |
| 4 °C: forever |
Sequences of the cnidarian outgroups used in the phylogenetic analyses of Staurozoa, including their GenBank accession numbers.
| Class | Species | Molecular markers | |
|---|---|---|---|
| 18S (SSU) | 28S (LSU) | ||
| Anthozoa | |||
| Cubozoa | |||
| Hydrozoa | |||
| Scyphozoa | |||
Molecular alignments information.
| Alignments | NT | SA | C | V | Pi | S |
|---|---|---|---|---|---|---|
| COI | 27 | 587 | 344 | 243 | 232 | 11 |
| 16S | 35 | 561 | 301 | 260 | 239 | 21 |
| ITS | 32 | 314 | 206 | 108 | 60 | 48 |
| 18S (SSU) | 42 | 1,562 | 1,275 | 287 | 198 | 89 |
| 28S (LSU) | 42 | 3,004 | 2,285 | 719 | 558 | 161 |
| Combined | 45 | 6,028 | 4,411 | 1,617 | 1,287 | 330 |
Note:
NT, number of taxa; SA, size of alignment; C, conserved sites; V, variable sites; Pi, parsimony informative sites; S, singleton sites.
Species of Staurozoa used in the detailed morphological descriptions, with respective localities, voucher catalog numbers, and slides catalog numbers.
| Species | Locality | Voucher catalog number | Slides catalog number |
|---|---|---|---|
| Woods Hole, Massachusetts, USA | USNM 54321 | LEM 17 | |
| Kalk Bay, Cape Town, South Africa | MZUSP 002733 | – | |
| Muroran, Hokkaido, Japan | USNM 1106652 | LEM 09 | |
| Aracruz, Espírito Santo, Brazil | MZUSP 1563 | LEM 14 | |
| Taputeranga Marine Reserve, Wellington, New Zealand | NIWA 86808 | LEM 18 | |
| Aquarium, Katsuura, Chiba, Japan | USNM 1315325 | – | |
| Île Verte, Roscoff, France | USNM 1233741 | – | |
| Wembury, Plymouth, England | USNM 1233742 | – | |
| Gerloff Bay, South Australia, Australia | USNM 1233740 | – | |
| Janus Island, Palmer Archipelago, Antarctica | USNM 79939 | – | |
| Muroran, Hokkaido, Japan | USNM 1106645 | LEM 10 | |
| Muroran, Hokkaido, Japan | USNM 1106656 | LEM 15 |
Note:
LEM, Laboratory of Marine Evolution of the Institute of Biosciences, University of São Paulo; MZUSP, Museum of Zoology of the University of São Paulo; NZ, New Zealand; NIWA, National Institute of Water and Atmospheric Research; USNM, National Museum of Natural History, Smithsonian, USA.
Figure 3Parsimony phylogenetic hypothesis.
Analysis based on combined data of mitochondrial markers COI and 16S, and nuclear markers ITS, 18S (SSU), and 28S (LSU). Single most parsimonious tree, length: 1682.18 steps. Bootstrap indices under parsimony at each node. ANT, Antarctica; AUS, Australia; EPR, East Pacific Rise; GER, Germany; JAP, Japan; NZ, New Zealand; SAF, South Africa; UK, the United Kingdom; USA, the United States of America.
Figure 5Bayesian phylogenetic hypothesis.
Analysis based on combined data of mitochondrial markers COI and 16S, and nuclear markers ITS, 18S (SSU), and 28S (LSU). Posterior probability at each node. ANT, Antarctica; AUS, Australia; EPR, East Pacific Rise; GER, Germany; JAP, Japan; NZ, New Zealand; SAF, South Africa; UK, the United Kingdom; USA, the United States of America.
Figure 6Support of each individual molecular marker for the main groups observed in the combined analyses.
White squares represent non monophyletic groups, and gray squares represent monophyletic groups. First row: individual molecular markers under parsimony analyses; second row: individual molecular markers under maximum likelihood analyses; third row: individual molecular markers under Bayesian analyses. PA, parsimony; ML, maximum likelihood; BA, Bayesian. “?” indicates groups whose monophyly could not be corroborate for a particular molecular marker (only one species).
Figure 7New proposal of classification based on molecular phylogenetic analyses.
“?” indicates groups not included in the analysis, classified according to morphological evidence. EPR, East Pacific Rise; UK, the United Kingdom; USA, the United States of America.
Figure 8Historical proposals of classifications for Staurozoa.
Classification proposed in this study (F), based on molecular phylogenetic analysis and on additional morphological evidence. In red, new names proposed by the author of respective classification.
New proposal for classification of Staurozoa based on the phylogenetic hypotheses (Figs. 3–5 and 7), also considering non-sampled genera (see text for further explanation).
| Upper Rank | Family | Genus | Species | ||
|---|---|---|---|---|---|
| CLASS STAUROZOA | Suborder Amyostaurida nov. | Craterolophidae | |||
| Kishinouyeidae | |||||
| Suborder Myostaurida nov. | Haliclystidae | ||||
| Kyopodiidae | |||||
| Lipkeidae | |||||
| Lucernariidae | |||||
Note:
Type species for each genus.
Figure 9Claustrum connecting adjacent septa.
Craterolophus convolvulus: (A) beginning of claustrum delimitation (indicated by black arrow) between adjacent septa (sp) in peduncle; (B) claustrum (cs) completely delimited at base of calyx, enclosing accessory radial pockets (ar); Manania uchidai: (C) claustrum (cs) completely delimited at base of calyx, enclosing accessory radial pockets (ar); (D) claustrum (cs) between accessory radial pockets (ar) and principal radial pockets (pr) (associated with gonads) in calyx, and a central manubrium (mn); Calvadosia sp. 2 NZ: (E) absence of claustrum connecting adjacent septa (sp) in peduncle; (F) absence of claustrum at the base of calyx between adjacent septa (sp); (G) gastric radial pocket (gp) associated with gonads (gd). Cross-sections. Photo credit: Lucília Miranda.
Main morphological characters used in the taxonomy of Staurozoa and their occurrence in each genus.
| Staurozoan genera | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Characters | States | |||||||||||
| Claustrum | Present | X | X | X | X | X | ||||||
| Absent | X | X | X | X | X | X | ||||||
| Muscles in peduncle | Present | X | X | X | X | X | X | X | X | X | ||
| Absent | X | X | ||||||||||
| Number of chambers in peduncle | 4 | X | X | X | X | X | X | ? | ||||
| 1 | X | X | X | X | X | |||||||
| 4 basal, 1 medial | X | |||||||||||
| 1 basal, 4 medial | X | |||||||||||
| Anchors and primary tentacles | Absent | X | X | ? | X | |||||||
| Primary tentacles | X | X | Migration (see text) | |||||||||
| Anchors | X | X | X | X | X | |||||||
| Pad-like adhesive structures | Absent | X | X | X | X | X | ||||||
| Tentacles | X | X | X | X | X | X | X | |||||
| Arms | X | |||||||||||
| Coronal muscle | Divided | X | X | X | X | |||||||
| Entire | X | X | X | ? | X | X | X | |||||
| Vestigial | X | |||||||||||
Note:
Based on Gosse (1860), Clark (1863), Mayer (1910), Uchida (1929), Uchida & Hanaoka (1933), Uchida & Hanaoka (1934), Carlgren (1935), Ling (1937), Kramp (1961), Larson (1980), Larson (1988), Hirano (1986), Hirano (1997), Larson & Fautin (1989), Kikinger & Salvini-Plawen (1995) and Pisani et al. (2007).
Figure 10Interradial longitudinal muscles in peduncle.
Manania uchidai: (A) presence of interradial longitudinal muscles (mu); Calvadosia cruciformis: (B) absence of interradial longitudinal muscles (indicated by arrow). Cross-sections. Photo credit: Lucília Miranda.
Figure 11Hypothesis of character evolution for staurozoan genera.
ACCTRAN optimization of selected morphological and life-history features according to our molecular phylogenetic analyses. Synapomorphies and symplesiomorphies are based on Collins & Daly (2005). The presence of claustrum as a potential symplesiomorphy of Staurozoa (Collins & Daly, 2005) is equivocal, and the state in outgroups needs careful reconsideration based on detailed histological studies. If considered a symplesiomorphy of Staurozoa, claustrum was lost in Calvadosia, Haliclystus, and in the clade Lucernaria + Lipkea (most parsimonious reconstruction). Anchors are adhesive structures resulting from metamorphosis of eight primary tentacles (perradial and interradial). Coronal muscle divided into eight sections by the adradial arms or entire. The species with 4/1-chambered peduncle have four chambers basally and one chamber in the middle of the peduncle.
Figure 12Coronal muscle.
Craterolophus convolvulus: (A) divided coronal muscle (cm); Lipkea sp. Japan: (B) entire coronal muscle (cm); Manania uchidai: (C) external (exumbrellar) coronal muscle (cm) in relation to anchor (an); Depastromorpha africana: (D) internal (subumbrellar) coronal muscle in relation to anchor (an). Photo credit: Lucília Miranda.
Figure 13Primary tentacles and anchors.
Craterolophus convolvulus: (A) absence of primary tentacles and anchors (indicated by black arrow) between arms; Calvadosia cruciformis: (B) presence of primary tentacles (pt); Manania uchidai: (C) anchors (an) with a knobbed remnant of primary tentacles; Depastromorpha africana: (D) anchors (an) with a knobbed remnant of primary tentacles; Haliclystus tenuis: (E) anchors (an). Photo credit: Lucília Miranda.
Figure 14Chambers in the peduncle.
Haliclystus tenuis: (A) four perradial chambers (pc) in peduncle; Calvadosia corbini: (B) one central gastric chamber (indicated by arrow) in the middle region of peduncle. Cross-sections. Photo credit: Lucília Miranda.
Figure 15Pad-like adhesive structures.
Calvadosia tasmaniensis: (A–B) pad (pa) on the tip of an arm separate from the secondary tentacles (tc); Calvadosia cruxmelitensis: (C) pad (pa) on the tip of an arm, with secondary tentacles (tc) arising directly from it; Craterolophus convolvulus: (D) pads (pa) in the outermost secondary tentacles (tc); Calvadosia vanhoeffeni: (E) pads (pa) in the outermost secondary tentacles (tc); Calvadosia campanulata: (F) pads (pa) in the outermost secondary tentacles (tc). Photo credit: Lucília Miranda.
Figure 16Evolution of pad-like adhesive structures in Kishinouyeidae.
Most parsimonious reconstruction of pad-like adhesive structures in Kishinouyeidae according to our molecular phylogenetic hypothesis.