| Literature DB >> 27160928 |
Gilberto Pasinelli1,2, Alex Grendelmeier3,4, Michael Gerber5,6, Raphaël Arlettaz4,7.
Abstract
BACKGROUND: Understanding the factors underlying habitat selection is important in ecological and evolutionary contexts, and crucial for developing targeted conservation action in threatened species. However, the key factors associated to habitat selection often remain poorly known. We evaluated hypotheses related to abiotic and biotic factors thought to affect territory selection of the wood warbler Phylloscopus sibilatrix, a passerine living in an unpredictable environment owing to irregular rodent outbreaks and showing long-term declines particularly in Western Europe.Entities:
Keywords: AICc model selection; Aves; Ecological niche; Forestry; Habitat; Passeriformes
Mesh:
Year: 2016 PMID: 27160928 PMCID: PMC4860761 DOI: 10.1186/s12898-016-0078-8
Source DB: PubMed Journal: BMC Ecol ISSN: 1472-6785 Impact factor: 2.964
Fig. 1Location of study areas in Switzerland. 1 = Belchen, 2 = Bänkerjoch, 3 = Blauen, 4 = Erschwil, 5 = Ennenda, 6 = Gündelhardt, 7 = Hochwald, 8 = Homberg, 9 = Kleinlützel, 10 = Langenbruck, 11 = Lauwil, 12 = Montsevelier, 13 = Mönthal, 14 = Oltingen, 15 = Scheltenpass, 16 = Staffelegg, 17 = Ueberstorf, 18 = Wintersingen. Study sites 13, 17 and 18 only used in the comparison between breeding territories vs. abandoned territories. See Additional file 1 for details on the study areas. Basemap © Institute of Cartography and Geoinformation, ETH Zurich, reproduced with permission from 11 April 2016
Fig. 2Sampling design for assessing habitat structure variables and rodent numbers. Territory center is the nest position in occupied territories or X/Y-coordinates in control areas and abandoned territories (see text for details). Bold lines indicate distances, bold squares exemplify 1 m2 and 50 m2 squares, respectively. Adapted from [42]
Variable names and descriptions and associated hypotheses
| Hypothesis | Variable | Description | Breeding | Control | Abandoned |
|---|---|---|---|---|---|
| Forest structure | |||||
| Ground variables | Cover of herb layer a | Percentage of ground covered by vegetation < 0.5 m, visually estimated | 24.2, 10.9–42.6 | 14.8, 6.4–32.0 | 25.5, 12.2–29.2 |
| Number of tussocks b | Number of grass and sedge tussocks | 325.5, 122.8–653.5 | 40.0, 3.0–216.0 | 28.5, 0–310.8 | |
| Number of bushes c | Number of bushes > 0.5 m height and number of young trees with dbh < 8 cm | 38.5, 17.8–70.8 | 69.0, 12.0–246.0 | 34.0, 6.8–137.8 | |
| Tree variables | Number of trees c | Number of trees with dbh > 8 cm | 16.5, 13.0–22.0 | 13.0, 10.0–17.0 | 11.0, 7.8–14.5 |
| Number of trees branched < 4 m c | Number of trees with branches below 4 m | 10.0, 6.0–14.0 | 7.0, 4.0–11.0 | 5.5, 3.8–10.3 | |
| Number of trees branched < 10 m c | Number of trees with branches below 10 m | 13.0, 9.0–18.0 | 9.0, 6.0–13.0 | 7.0, 6.0–12.0 | |
| Tree dbh d | Average dbh of all trees with dbh > 8 cm | 26.0, 22.3–30.0 | 31.0, 26.0–36.0 | 27.5, 24–37.5 | |
| Tree species diversity e | Shannon’s index of diversity based on tree species and dbh data | 1.2, 0.7–1.5 | 0.9, 0.7–1.3 | 0.9, 0.6–1.2 | |
| Sky visibility d | Percentage of sky visible (see “ | 13.0, 9.0–19.0 | 14.0, 10.0–19.0 | 10.5, 9.0–21.8 | |
| Proportion beech e | Number of beech trees divided by total number of trees | 43.2, 20.3–59.3 | 50.0, 29.2–69.6 | 52.3, 33.3–58.5 | |
| Proportion other deciduous trees e | Number of deciduous trees except beech divided by total number of trees | 31.7, 18.6–47.1 | 25.0, 14.3–50 | 41.4, 18.6–53.1 | |
| Proportion conifers e | Number of coniferous trees divided by total number of trees | 13.1, 0–31.7 | 0, 0–29.4 | 0, 0–15.4 | |
| Rodent-avoidance | Rodent numbers | Number of rodents captured in the 25 traps per territory or control area | 8.0, 0–15.8 | 13.0, 4.0–22.0 | 7.0, 1.0–13.3 |
| Anthropogenic disturbance | Distance to paths f | Distance to paths, i.e. trails regularly used by humans | 48.0, 15.0–75.8 | – | 37.5, 25.8–45.5 |
| Distance to forest edge f | Distance to edge of forest | 148.5, 102.8–237.8 | 153.0, 72.0–224.0 | 98.5, 60.8–148.5 | |
| Topography | Elevation f | Elevation in m above sea level | 698, 656–931 | 699, 610–920 | 575, 548–740 |
| Aspect d | Measured in degrees (o) with a compass in the centre of each 50-m2-square | 174, 144–204 | 171, 127–227 | 162, 109–307 | |
| Slope steepness d | Measured in degrees (o) with a compass in the centre of each 50-m2-square | 31.5, 27.0–37.0 | 26.0, 21.0–33.0 | 21, 16.8–23.5 | |
Shown are medians and interquartile (25–75 %) ranges
Dbh = diameter at breast height. N = 73 for breeding territories and control areas, respectively, and n = 20 for abandoned territories
a Averaged over the 25 1-m2-squares per breeding territory, per control area and per abandoned territory, respectively
b Summed over the 25 1-m2-squares per breeding territory, per control area and per abandoned territory, respectively
c Summed over the five 50-m2-squares per breeding territory, per control area and per abandoned territory, respectively
d Averaged over the five 50-m2-squares per breeding territory, per control area and per abandoned territory, respectively
e Calculated over the five 50-m2-squares per breeding territory, per control area and per abandoned territory, respectively
f Recorded for the centres of each breeding and abandoned territory and extracted from ecoGIS (www.ecogis.admin.ch)
Fig. 3Overview on the model selection design applied. Variables of the forest structure hypothesis were placed in three thematic subgroups to avoid over-parameterizing and convergence problems of models. For further details, see “Modeling approach and model selection” section and Additional file 3
Model selection results of the analysis of breeding territories vs. control areas (n = 73 pairs)
| Hypothesis | Variables in model | LL | K | AICc | ΔAICc | Weight |
|---|---|---|---|---|---|---|
| Forest structure | ||||||
| (a) Ground variables | Number of bushes, number of tussocks, cover of herb layer2 | −77.238 | 7 | 169.288 | 0 | 0.232 |
| Number of bushes, year, number of bushes x year, number of tussocks | −75.155 | 9 | 169.633 | 0.345 | 0.195 | |
| Number of bushes, number of tussocks | −80.208 | 5 | 170.845 | 1.557 | 0.106 | |
| Number of bushes, number of tussocks2, cover of herb layer2 | −77.089 | 8 | 171.230 | 1.942 | 0.088 | |
| … | ||||||
| Null | −101.199 | 3 | 208.568 | 39.280 | 0.000 | |
| (b) Tree variables | Number of trees, tree dbh | −87.397 | 5 | 185.224 | 0 | 0.158 |
| Number of trees, tree dbh, tree species diversity2 | −85.854 | 7 | 186.520 | 1.297 | 0.083 | |
| Number of trees, tree dbh, tree species diversity | −87.160 | 6 | 186.924 | 1.701 | 0.068 | |
| … | ||||||
| Null | −101.199 | 3 | 208.568 | 23.345 | 0.000 | |
| (c) Tree species composition | Null | −101.199 | 3 | 208.568 | 0 | 0.114 |
| Proportion beech, propoprtion other deciduous trees, proportion conifers2 | −97.099 | 7 | 209.01 | 0.442 | 0.091 | |
| Proportion beech, propoprtion other deciduous trees, proportion conifers | −98.227 | 6 | 209.059 | 0.491 | 0.089 | |
| Proportion beech | −100.459 | 4 | 209.202 | 0.634 | 0.083 | |
| Proportion beech2, propoprtion other deciduous trees, proportion conifers2 | −96.542 | 8 | 210.134 | 1.566 | 0.052 | |
| Rodent-avoidance | Rodent numbers, year, rodent numbers x year | −93.230 | 8 | 203.511 | 0 | 0.498 |
| Rodent numbers | −98.100 | 4 | 204.483 | 0.972 | 0.306 | |
| Null | −101.199 | 3 | 208.568 | 5.057 | 0.040 | |
| Topography | Slope steepness | −91.564 | 4 | 191.412 | 0 | 0.558 |
| … | ||||||
| Null | −101.199 | 3 | 208.568 | 17.156 | 0 | |
| Across hypotheses | Slope steepness, rodent numbers, number of tussocks, cover of herb layer2, number of trees, number of bushes, tree dbh | −62.749 | 11 | 149.469 | 0 | 0.107 |
| Slope steepness, rodent numbers, number of tussocks, cover of herb layer2, number of trees, number of bushes | −63.958 | 10 | 149.545 | 0.076 | 0.103 | |
| Slope steepness, rodent numbers, number of tussocks, cover of herb layer2, number of trees, tree dbh | −64.066 | 10 | 149.762 | 0.293 | 0.092 | |
| Slope steepness, rodent numbers, number of tussocks, cover of herb layer2, number of trees | −65.448 | 9 | 150.220 | 0.751 | 0.073 | |
| Slope steepness, number of tussocks, cover of herb layer2, number of trees, number of bushes | −65.976 | 9 | 151.275 | 1.806 | 0.043 | |
| Slope steepness, rodent numbers, number of tussocks, cover of herb layer2, number of trees, tree dbh, tree species diversity2 | −62.470 | 12 | 151.285 | 1.816 | 0.043 | |
| Slope steepness, rodent numbers, number of tussocks, cover of herb layer2, number of trees, tree species diversity2 | −63.658 | 11 | 151.287 | 1.817 | 0.043 | |
| … | ||||||
| Null | −101.199 | 3 | 208.568 | 59.099 | 0.000 | |
For each hypothesis, the top-ranked model (ΔAICc = 0), the models with ΔAICc < 2 to the top-ranked model and the null model (referred to as “null”) are shown. “…” refers to additional models examined, but not listed in detail to avoid overlong table, as they were little informative
The quadratic effect of a variable x, composed of a linear and a quadratic component (x ± x2), is denoted as x2
LL log-likelihood, K number of parameters in the model (including random effects and intercept), weight Akaike weight (chance of the model to be the best one, given the candidate models)
Estimates, standard errors (SE), and 2.5–97.5 % confidence limits based on model-averaging from the across-hypotheses model selection of (A) breeding territories vs. control areas (n = 73 pairs) and (B) breeding territories (n = 56) vs. abandoned territories (n = 20)
| Hypothesis | Variable | Estimate | SE | 2.5 % | 97.5 % |
|---|---|---|---|---|---|
| (a) Forest structure | |||||
| Ground variables | Cover of herb layer (lin. term) | 0.98 | 0.45 | 0.09 | 1.87 |
| Cover of herb layer (quad. term) | −0.71 | 0.28 | −1.25 | −0.16 | |
| Number of bushes | −0.58 | 0.37 | −1.31 | 0.15 | |
| Number of tussocks | 1.78 | 0.81 | 0.18 | 3.37 | |
| Tree variables | Number of trees | 0.94 | 0.31 | 0.32 | 1.55 |
| Tree dbh | −0.48 | 0.31 | −1.09 | 0.13 | |
| Tree species diversity (lin. term) | −0.22 | 0.27 | −0.75 | 0.31 | |
| Tree species diversity (quad. term) | 0.27 | 0.21 | −0.13 | 0.67 | |
| Topography | Slope steepness | 0.91 | 0.28 | 0.35 | 1.46 |
| Rodent-avoidance | Rodent numbers | −0.60 | 0.30 | −1.19 | −0.01 |
| (b) Forest structure | |||||
| Tree variables | Number of trees | 1.72 | 0.70 | 0.36 | 3.09 |
| Disturbance | Distance to forest edge | 3.58 | 1.52 | 0.60 | 6.57 |
| Topography | Slope steepness | 2.20 | 0.76 | 0.71 | 3.68 |
Shown are variables included in the highest ranking models and in models with ΔAICc < 2 to the highest ranking ones
Lin linear; quad quadratic
Fig. 4Habitat variables discriminating breeding territories and control areas. Shown are plots of the five variables whose model-averaged coefficients did not include 0 (cf. Table 3). The solid lines are fitted values based on model-averaged coefficients of the seven top-ranked GLMMs of the across-hypotheses analysis (Table 2), the dotted lines show 95 % confidence limits. To calculate the fitted values, the variable of interest (x-axis) was varied within the observed range while the others were fixed on their average values. For each variable, inset box plots show median (bold line), 25–75 % range (grey box), range of data within 1.5 times the interquartile range from the corresponding quartile (whiskers) and observations beyond this range (dots) for occupancy probability equaling 0 (control areas) or 1 (breeding territories). Nterritories = 73, ncontrol areas = 73
Model selection results of the analysis of breeding territories (n = 56) vs. abandoned territories (n = 20)
| Hypothesis | Variables in model | LL | K | AICc | ΔAICc | Weight |
|---|---|---|---|---|---|---|
| Forest structure | ||||||
| (a) Ground variables | Number of tussocks, year, number of tussocks x year | −22.315 | 7 | 60.277 | 0 | 0.202 |
| Number of tussocks, number of bushes2 | −22.774 | 7 | 61.194 | 0.917 | 0.128 | |
| Number of tussocks, number of bushes2, cover of herb layer | −21.562 | 8 | 61.273 | 0.996 | 0.123 | |
| Number of tussocks, year, number of tussocks x year, number of bushes | −21.798 | 8 | 61.745 | 1.468 | 0.097 | |
| Number of tussocks, year, number of tussocks x year, cover of herb layer | −21.986 | 8 | 62.122 | 1.845 | 0.080 | |
| … | ||||||
| Null | −31.868 | 4 | 72.299 | 12.022 | 0.000 | |
| (b) Tree variables | Number of trees2, tree dbh2, tree species diversity2 | −17.092 | 10 | 57.569 | 0 | 0.091 |
| Number of trees, tree species diversity2 | −21.187 | 7 | 58.020 | 0.452 | 0.072 | |
| Number of trees, tree dbh2, tree species diversity2 | −18.652 | 9 | 58.031 | 0.462 | 0.072 | |
| Number of trees2 | −22.514 | 6 | 58.246 | 0.677 | 0.065 | |
| Number of trees, tree species diversity2, tree dbh | −20.060 | 8 | 58.269 | 0.701 | 0.064 | |
| Number of trees, tree dbh2, tree species diversity2, sky visibility | −17.695 | 10 | 58.776 | 1.207 | 0.050 | |
| Number of trees2, tree dbh2, tree species diversity2, sky visibility | −16.336 | 11 | 58.797 | 1.229 | 0.049 | |
| Number of trees2, tree species diversity2 | −20.364 | 8 | 58.877 | 1.308 | 0.047 | |
| Number of trees2, tree dbh2, tree species diversity2, sky visibility2 | −15.234 | 12 | 59.420 | 1.852 | 0.036 | |
| … | ||||||
| Null | −31.868 | 4 | 72.299 | 14.730 | 0.000 | |
| (c) Tree species composition | Proportion conifers | −29.723 | 5 | 70.303 | 0 | 0.265 |
| Proportion conifers, proportion beech | −29.533 | 6 | 72.283 | 1.981 | 0.098 | |
| Proportion conifers, proportion other deciduous trees | −29.539 | 6 | 72.295 | 1.992 | 0.098 | |
| … | ||||||
| Null | −31.868 | 4 | 72.299 | 1.996 | 0.098 | |
| Rodent-avoidance | Null | −31.868 | 4 | 72.299 | 0 | 0.575 |
| Rodent numbers | −31.023 | 5 | 72.903 | 0.605 | 0.425 | |
| Disturbance | Distance to forest edge, distance to path2 | −20.719 | 7 | 57.084 | 0 | 0.694 |
| Distance to forest edge2, distance to path2 | −20.453 | 8 | 59.055 | 1.97 | 0.259 | |
| … | ||||||
| Null | −31.868 | 4 | 72.299 | 15.214 | 0.000 | |
| Topography | Slope steepness2, elevation2, southness, eastness | −13.541 | 10 | 50.467 | 0 | 0.692 |
| … | ||||||
| Null | −31.868 | 4 | 72.299 | 21.832 | 0.000 | |
| Across hypothesesa | Slope steepness, distance to forest edge, number of trees | −14.985 | 7 | 45.457 | 0 | 0.734 |
| … | ||||||
| Null | −31.868 | 4 | 72.299 | 26.842 | 0.000 | |
For each hypothesis, the top-ranked model (ΔAICc = 0), the models with ΔAICc < 2 to the top-ranked model and the null model (referred to as “null”) are shown. “…” refers to additional models examined, but not listed in detail to avoid overlong table
LL log-likelihood; K number of parameters in the model (including intercept), weight Akaike weight (chance of the model to be the best one, given the candidate models)
The quadratic effect of a variable x, composed of a linear and a quadratic component (x ± x2), is denoted as x2
Each model included x- and y-coordinates (and their interaction) of territories to account for spatial autocorrelation
a Only linear terms of variables from best models per hypothesis and at most three habitat variables jointly used due to convergence problems with quadratic terms and more than three habitat variable per model
Fig. 5Habitat variables discriminating breeding and abandoned territories. Shown are plots of the three variables whose model-averaged coefficients did not include 0 (Table 3). The solid lines are fitted values based on model-averaged coefficients of the three best-supported GLMs of the across-hypotheses analysis (Table 4), the dotted lines show 95 % confidence limits. To calculate the fitted values, the variable of interest (x-axis) was varied within the observed range while the others were fixed on their average values. For each variable, inset box plots show median (bold line), 25–75 % range (grey box), range of data within 1.5 times the interquartile range from the corresponding quartile (whiskers) and observations beyond this range (dots) for occupancy probability equaling 0 (abandoned territories) or 1 (breeding territories). Noccupied = 56, nabandoned = 20