Literature DB >> 27152236

Genetic profiling of intrahepatic cholangiocarcinoma and its clinical implication in targeted therapy.

Diyang Xie1, Zhenggang Ren1, Jia Fan2, Qiang Gao1.   

Abstract

Intrahepatic cholangiocarcinoma (iCCA) is a treatment-refractory primary liver cancer with an increasing incidence and mortality worldwide in recent years. Lack of a stereotyped genetic signature and limited understanding of genomic landscape make the development of effective targeted therapies challenging. Recent application of advanced technologies such as next-generation sequencing (NGS) has broadened our understanding of genetic heterogeneity in iCCA and many potentially actionable genetic alterations have been identified. This review explores the recent advances in defining genetic alterations in iCCAs, which may present potent therapeutic targets. Chromatin remodeling genes and genes encoding isocitrate dehydrogenase and tyrosine kinase receptors as well as their downstream effectors are among the most frequently altered genes. Clinical trials testing the effect of new targeted agents on iCCA patients, especially those with the above genetic markers are under way. However, the complex interplay of environmental and evolutionary factors contributing to the genetic variability in iCCA calls for a more cautionary use of NGS in tailoring targeted regimen to the patients. Next-generation functional testing may complement NGS to execute precision medicine in future.

Entities:  

Keywords:  Cholangiocarcinoma; genetic heterogeneity; targeted therapy

Year:  2016        PMID: 27152236      PMCID: PMC4851838     

Source DB:  PubMed          Journal:  Am J Cancer Res        ISSN: 2156-6976            Impact factor:   6.166


  59 in total

1.  Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity.

Authors:  Akihiro Fujimoto; Mayuko Furuta; Yuichi Shiraishi; Kunihito Gotoh; Yoshiiku Kawakami; Koji Arihiro; Toru Nakamura; Masaki Ueno; Shun-ichi Ariizumi; Ha Hai Nguyen; Daichi Shigemizu; Tetsuo Abe; Keith A Boroevich; Kaoru Nakano; Aya Sasaki; Rina Kitada; Kazihiro Maejima; Yujiro Yamamoto; Hiroko Tanaka; Tetsuo Shibuya; Tatsuhiro Shibata; Hidenori Ojima; Kazuaki Shimada; Shinya Hayami; Yoshinobu Shigekawa; Hiroshi Aikata; Hideki Ohdan; Shigeru Marubashi; Terumasa Yamada; Michiaki Kubo; Satoshi Hirano; Osamu Ishikawa; Masakazu Yamamoto; Hiroki Yamaue; Kazuaki Chayama; Satoru Miyano; Tatsuhiko Tsunoda; Hidewaki Nakagawa
Journal:  Nat Commun       Date:  2015-01-30       Impact factor: 14.919

2.  Integrative molecular analysis of intrahepatic cholangiocarcinoma reveals 2 classes that have different outcomes.

Authors:  Daniela Sia; Yujin Hoshida; Augusto Villanueva; Sasan Roayaie; Joana Ferrer; Barbara Tabak; Judit Peix; Manel Sole; Victoria Tovar; Clara Alsinet; Helena Cornella; Brandy Klotzle; Jian-Bing Fan; Christian Cotsoglou; Swan N Thung; Josep Fuster; Samuel Waxman; Juan Carlos Garcia-Valdecasas; Jordi Bruix; Myron E Schwartz; Rameen Beroukhim; Vincenzo Mazzaferro; Josep M Llovet
Journal:  Gastroenterology       Date:  2013-01-04       Impact factor: 22.682

3.  Mouse model of intrahepatic cholangiocarcinoma validates FIG-ROS as a potent fusion oncogene and therapeutic target.

Authors:  Anna Saborowski; Michael Saborowski; Monika A Davare; Brian J Druker; David S Klimstra; Scott W Lowe
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-23       Impact factor: 11.205

4.  IDH1(R132H) mutation increases murine haematopoietic progenitors and alters epigenetics.

Authors:  Masato Sasaki; Christiane B Knobbe; Joshua C Munger; Evan F Lind; Dirk Brenner; Anne Brüstle; Isaac S Harris; Roxanne Holmes; Andrew Wakeham; Jillian Haight; Annick You-Ten; Wanda Y Li; Stefanie Schalm; Shinsan M Su; Carl Virtanen; Guido Reifenberger; Pamela S Ohashi; Dwayne L Barber; Maria E Figueroa; Ari Melnick; Juan-Carlos Zúñiga-Pflücker; Tak W Mak
Journal:  Nature       Date:  2012-08-30       Impact factor: 49.962

Review 5.  Intra-tumour heterogeneity: a looking glass for cancer?

Authors:  Andriy Marusyk; Vanessa Almendro; Kornelia Polyak
Journal:  Nat Rev Cancer       Date:  2012-04-19       Impact factor: 60.716

6.  Massive parallel sequencing uncovers actionable FGFR2-PPHLN1 fusion and ARAF mutations in intrahepatic cholangiocarcinoma.

Authors:  Daniela Sia; Bojan Losic; Agrin Moeini; Laia Cabellos; Ke Hao; Kate Revill; Dennis Bonal; Oriana Miltiadous; Zhongyang Zhang; Yujin Hoshida; Helena Cornella; Mireia Castillo-Martin; Roser Pinyol; Yumi Kasai; Sasan Roayaie; Swan N Thung; Josep Fuster; Myron E Schwartz; Samuel Waxman; Carlos Cordon-Cardo; Eric Schadt; Vincenzo Mazzaferro; Josep M Llovet
Journal:  Nat Commun       Date:  2015-01-22       Impact factor: 14.919

7.  Mitogen-activated protein kinase kinase kinase 4 deficiency in intrahepatic cholangiocarcinoma leads to invasive growth and epithelial-mesenchymal transition.

Authors:  Liu-Xiao Yang; Qiang Gao; Jie-Yi Shi; Zhi-Chao Wang; Yong Zhang; Ping-Ting Gao; Xiao-Ying Wang; Ying-Hong Shi; Ai-Wu Ke; Guo-Ming Shi; Jia-Bin Cai; Wei-Ren Liu; Meng Duan; Ying-Jun Zhao; Yuan Ji; Dong-Mei Gao; Kai Zhu; Jian Zhou; Shuang-Jian Qiu; Ya Cao; Qi-Qun Tang; Jia Fan
Journal:  Hepatology       Date:  2015-10-17       Impact factor: 17.425

8.  Exome sequencing identifies frequent inactivating mutations in BAP1, ARID1A and PBRM1 in intrahepatic cholangiocarcinomas.

Authors:  Yuchen Jiao; Timothy M Pawlik; Robert A Anders; Florin M Selaru; Mirte M Streppel; Donald J Lucas; Noushin Niknafs; Violeta Beleva Guthrie; Anirban Maitra; Pedram Argani; G Johan A Offerhaus; Juan Carlos Roa; Lewis R Roberts; Gregory J Gores; Irinel Popescu; Sorin T Alexandrescu; Simona Dima; Matteo Fassan; Michele Simbolo; Andrea Mafficini; Paola Capelli; Rita T Lawlor; Andrea Ruzzenente; Alfredo Guglielmi; Giampaolo Tortora; Filippo de Braud; Aldo Scarpa; William Jarnagin; David Klimstra; Rachel Karchin; Victor E Velculescu; Ralph H Hruban; Bert Vogelstein; Kenneth W Kinzler; Nickolas Papadopoulos; Laura D Wood
Journal:  Nat Genet       Date:  2013-11-03       Impact factor: 38.330

9.  High throughput molecular profiling reveals differential mutation patterns in intrahepatic cholangiocarcinomas arising in chronic advanced liver diseases.

Authors:  Sejin Jang; Sung-Min Chun; Seoung-Mo Hong; Chang Ohk Sung; Hosub Park; Hyo Jeong Kang; Kyu-pyo Kim; Young Joo Lee; Eunsil Yu
Journal:  Mod Pathol       Date:  2013-11-01       Impact factor: 7.842

10.  Inferring the progression of multifocal liver cancer from spatial and temporal genomic heterogeneity.

Authors:  Jie-Yi Shi; Qingfeng Xing; Meng Duan; Zhi-Chao Wang; Liu-Xiao Yang; Ying-Jun Zhao; Xiao-Ying Wang; Yun Liu; Minghua Deng; Zhen-Bin Ding; Ai-Wu Ke; Jian Zhou; Jia Fan; Ya Cao; Jiping Wang; Ruibin Xi; Qiang Gao
Journal:  Oncotarget       Date:  2016-01-19
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  16 in total

1.  Phase II Study of BGJ398 in Patients With FGFR-Altered Advanced Cholangiocarcinoma.

Authors:  Milind Javle; Maeve Lowery; Rachna T Shroff; Karl Heinz Weiss; Christoph Springfeld; Mitesh J Borad; Ramesh K Ramanathan; Lipika Goyal; Saeed Sadeghi; Teresa Macarulla; Anthony El-Khoueiry; Robin Kate Kelley; Ivan Borbath; Su Pin Choo; Do-Youn Oh; Philip A Philip; Li-Tzong Chen; Thanyanan Reungwetwattana; Eric Van Cutsem; Kun-Huei Yeh; Kristen Ciombor; Richard S Finn; Anuradha Patel; Suman Sen; Dale Porter; Randi Isaacs; Andrew X Zhu; Ghassan K Abou-Alfa; Tanios Bekaii-Saab
Journal:  J Clin Oncol       Date:  2017-11-28       Impact factor: 44.544

Review 2.  The emerging role of mast cells in liver disease.

Authors:  Veronica Jarido; Lindsey Kennedy; Laura Hargrove; Jennifer Demieville; Joanne Thomson; Kristen Stephenson; Heather Francis
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2017-05-04       Impact factor: 4.052

Review 3.  Cholangiocarcinoma: Classification, Histopathology and Molecular Carcinogenesis.

Authors:  Gábor Lendvai; Tímea Szekerczés; Idikó Illyés; Réka Dóra; Endre Kontsek; Alíz Gógl; András Kiss; Klára Werling; Ilona Kovalszky; Zsuzsa Schaff; Katalin Borka
Journal:  Pathol Oncol Res       Date:  2018-11-17       Impact factor: 3.201

4.  Comparing Clonality Between Components of Combined Hepatocellular Carcinoma and Cholangiocarcinoma by Targeted Sequencing.

Authors:  Jinyoung Jeon; Lee-So Maeng; Yoon Jin Bae; Eui-Jin Lee; Young Chul Yoon; Nara Yoon
Journal:  Cancer Genomics Proteomics       Date:  2018 Jul-Aug       Impact factor: 4.069

5.  Diagnosis of hilar cholangiocarcinoma using intravoxel incoherent motion diffusion-weighted magnetic resonance imaging.

Authors:  Xin Xu
Journal:  Abdom Radiol (NY)       Date:  2021-03-03

6.  FGFR2-IIIb Expression by Immunohistochemistry Has High Specificity in Cholangiocarcinoma with FGFR2 Genomic Alterations.

Authors:  Pedro Luiz Serrano Uson Junior; Thomas T DeLeon; James M Bogenberger; Rish K Pai; Heidi E Kosiorek; Jun Yin; Daniel H Ahn; Mohammad Bassam Sonbol; Tanios Bekaii-Saab; Aaron S Mansfield; Kenneth Buetow; Gregory J Gores; Rory Smoot; George Vasmatzis; Benjamin R Kipp; Amit Mahipal; Alexander T Baker; Hani Babiker; Oumar Barro; Chelsae Dumbauld; Yumei Zhou; Faaiq N Aslam; Michael Barrett; Bertram Jacobs; Nathalie Meurice; Mansi Arora; Joachim Petit; Natalie Elliott; Bolni Nagalo; Marcela A Salomao; Mitesh J Borad
Journal:  Dig Dis Sci       Date:  2021-11-13       Impact factor: 3.487

7.  Genotyping and mRNA profiling reveal actionable molecular targets in biliary tract cancers.

Authors:  Kyriaki Papadopoulou; Samuel Murray; Kyriaki Manousou; Ioannis Tikas; Christos Dervenis; Joseph Sgouros; Dimitra Rontogianni; Sotirios Lakis; Mattheos Bobos; Christos Poulios; Stavroula Pervana; Georgios Lazaridis; George Fountzilas; Vassiliki Kotoula
Journal:  Am J Cancer Res       Date:  2018-01-01       Impact factor: 6.166

8.  Relationship between PD-L1 expression, CD8+ T-cell infiltration and prognosis in intrahepatic cholangiocarcinoma patients.

Authors:  Min Deng; Shao-Hua Li; Xu Fu; Xiao-Peng Yan; Jun Chen; Yu-Dong Qiu; Rong-Ping Guo
Journal:  Cancer Cell Int       Date:  2021-07-12       Impact factor: 5.722

9.  Identification of MALT1 as both a prognostic factor and a potential therapeutic target of regorafenib in cholangiocarcinoma patients.

Authors:  Chun-Nan Yeh; Yu-Chan Chang; Yeu Su; Dennis Shin-Shian Hsu; Chi-Tung Cheng; Ren-Chin Wu; Yi-Hsiu Chung; Kun-Chun Chiang; Ta-Sen Yeh; Meng-Lun Lu; Chun-Yu Liu; Peter Mu-Hsin Chang; Ming-Han Chen; Chi-Ying F Huang; Michael Hsiao; Ming-Huang Chen
Journal:  Oncotarget       Date:  2017-12-08

10.  Utility of KRAS mutational analysis in the preoperative diagnosis of synchronous pancreatic cancer and intrahepatic cholangiocarcinoma: A case report.

Authors:  Yuji Eso; Norimitsu Uza; Hiroko Yamagishi; Kazuaki Imada; Yuto Kimura; Toshihiko Masui; Yuzo Kodama; Hiroshi Seno
Journal:  Medicine (Baltimore)       Date:  2017-12       Impact factor: 1.817

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