Literature DB >> 24185509

Exome sequencing identifies frequent inactivating mutations in BAP1, ARID1A and PBRM1 in intrahepatic cholangiocarcinomas.

Yuchen Jiao1,2,3, Timothy M Pawlik3,4, Robert A Anders3,5, Florin M Selaru6, Mirte M Streppel5, Donald J Lucas7, Noushin Niknafs8, Violeta Beleva Guthrie8, Anirban Maitra3,5, Pedram Argani3,5, G Johan A Offerhaus9, Juan Carlos Roa10, Lewis R Roberts11, Gregory J Gores11, Irinel Popescu12, Sorin T Alexandrescu12, Simona Dima12, Matteo Fassan13,14, Michele Simbolo13,14, Andrea Mafficini13, Paola Capelli14, Rita T Lawlor13,14, Andrea Ruzzenente15, Alfredo Guglielmi15, Giampaolo Tortora16, Filippo de Braud17, Aldo Scarpa13,14, William Jarnagin18, David Klimstra19, Rachel Karchin8, Victor E Velculescu1,2,3, Ralph H Hruban3,5, Bert Vogelstein1,2,3, Kenneth W Kinzler1,2,3, Nickolas Papadopoulos1,2,3, Laura D Wood5.   

Abstract

Through exomic sequencing of 32 intrahepatic cholangiocarcinomas, we discovered frequent inactivating mutations in multiple chromatin-remodeling genes (including BAP1, ARID1A and PBRM1), and mutation in one of these genes occurred in almost half of the carcinomas sequenced. We also identified frequent mutations at previously reported hotspots in the IDH1 and IDH2 genes encoding metabolic enzymes in intrahepatic cholangiocarcinomas. In contrast, TP53 was the most frequently altered gene in a series of nine gallbladder carcinomas. These discoveries highlight the key role of dysregulated chromatin remodeling in intrahepatic cholangiocarcinomas.

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Year:  2013        PMID: 24185509      PMCID: PMC4013720          DOI: 10.1038/ng.2813

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  21 in total

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4.  The consensus coding sequences of human breast and colorectal cancers.

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6.  Immunohistochemical and genetic analysis of non-small cell and small cell gallbladder carcinoma and their precursor lesions.

Authors:  Anil V Parwani; Joseph Geradts; Eric Caspers; G Johan Offerhaus; Charles J Yeo; John L Cameron; David S Klimstra; Anirban Maitra; Ralph H Hruban; Pedram Argani
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10.  IDH1 and IDH2 mutations in gliomas.

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Journal:  N Engl J Med       Date:  2009-02-19       Impact factor: 176.079

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6.  Utility of DNA flow cytometry in distinguishing between malignant and benign intrahepatic biliary lesions.

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Review 7.  Fibroblast growth factor receptor 2 fusions as a target for treating cholangiocarcinoma.

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Review 8.  The potential role of comprehensive genomic profiling to guide targeted therapy for patients with biliary cancer.

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9.  IDH mutations in liver cell plasticity and biliary cancer.

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10.  A Case of Metastatic Biliary Tract Cancer Diagnosed Through Identification of an IDH1 Mutation.

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