Literature DB >> 27151434

Diverse regulatory interactions of long noncoding RNAs.

Tae-Kyung Kim1, Ramin Shiekhattar2.   

Abstract

Long noncoding RNAs (lncRNAs) are emerging as important regulators of diverse biological functions. Studies in the past decade indicate that a large number of lncRNAs are enriched in the nucleus and originate from transcriptionally active regulatory elements. These lncRNAs associate with transcription factors and chromatin regulatory elements to fine-tune the transcriptional output of protein coding genes. Importantly, lncRNAs display exquisite tissue specificity in their expression. Understanding how lncRNAs associate with their protein or nucleic acid partners and how they modulate gene expression provides insight into their scope of biological function. This review discusses notable functional properties and mechanisms of action of lncRNAs that have resulted from recent progress made in the field.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27151434      PMCID: PMC4880524          DOI: 10.1016/j.gde.2016.03.014

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  80 in total

1.  Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes.

Authors:  Kerstin-Maike Schmitz; Christine Mayer; Anna Postepska; Ingrid Grummt
Journal:  Genes Dev       Date:  2010-10-15       Impact factor: 11.361

2.  Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1.

Authors:  Faizaan Mohammad; Tanmoy Mondal; Natalia Guseva; Gaurav Kumar Pandey; Chandrasekhar Kanduri
Journal:  Development       Date:  2010-06-23       Impact factor: 6.868

3.  Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA.

Authors:  Syuzo Kaneko; Gang Li; Jinsook Son; Chong-Feng Xu; Raphael Margueron; Thomas A Neubert; Danny Reinberg
Journal:  Genes Dev       Date:  2010-12-01       Impact factor: 11.361

4.  H3K36 methylation antagonizes PRC2-mediated H3K27 methylation.

Authors:  Wen Yuan; Mo Xu; Chang Huang; Nan Liu; She Chen; Bing Zhu
Journal:  J Biol Chem       Date:  2011-01-14       Impact factor: 5.157

5.  A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Authors:  Kevin C Wang; Yul W Yang; Bo Liu; Amartya Sanyal; Ryan Corces-Zimmerman; Yong Chen; Bryan R Lajoie; Angeline Protacio; Ryan A Flynn; Rajnish A Gupta; Joanna Wysocka; Ming Lei; Job Dekker; Jill A Helms; Howard Y Chang
Journal:  Nature       Date:  2011-03-20       Impact factor: 49.962

6.  The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse.

Authors:  Phillip Grote; Lars Wittler; David Hendrix; Frederic Koch; Sandra Währisch; Arica Beisaw; Karol Macura; Gaby Bläss; Manolis Kellis; Martin Werber; Bernhard G Herrmann
Journal:  Dev Cell       Date:  2013-01-28       Impact factor: 12.270

Review 7.  The Polycomb complex PRC2 and its mark in life.

Authors:  Raphaël Margueron; Danny Reinberg
Journal:  Nature       Date:  2011-01-20       Impact factor: 49.962

8.  Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.

Authors:  Michael T Y Lam; Han Cho; Hanna P Lesch; David Gosselin; Sven Heinz; Yumiko Tanaka-Oishi; Christopher Benner; Minna U Kaikkonen; Aneeza S Kim; Mika Kosaka; Cindy Y Lee; Andy Watt; Tamar R Grossman; Michael G Rosenfeld; Ronald M Evans; Christopher K Glass
Journal:  Nature       Date:  2013-06-02       Impact factor: 49.962

9.  PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

Authors:  Syuzo Kaneko; Jinsook Son; Steven S Shen; Danny Reinberg; Roberto Bonasio
Journal:  Nat Struct Mol Biol       Date:  2013-10-20       Impact factor: 15.369

10.  Integrator mediates the biogenesis of enhancer RNAs.

Authors:  Fan Lai; Alessandro Gardini; Anda Zhang; Ramin Shiekhattar
Journal:  Nature       Date:  2015-08-26       Impact factor: 49.962

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  15 in total

Review 1.  Regulatory feedback from nascent RNA to chromatin and transcription.

Authors:  Lenka Skalska; Manuel Beltran-Nebot; Jernej Ule; Richard G Jenner
Journal:  Nat Rev Mol Cell Biol       Date:  2017-03-08       Impact factor: 94.444

2.  Fetal γ-globin genes are regulated by the BGLT3 long noncoding RNA locus.

Authors:  Maria Soledad Ivaldi; Luis Francisco Diaz; Lyubomira Chakalova; Jongjoo Lee; Ivan Krivega; Ann Dean
Journal:  Blood       Date:  2018-08-27       Impact factor: 22.113

Review 3.  Epigenetic impacts of endocrine disruptors in the brain.

Authors:  Deena M Walker; Andrea C Gore
Journal:  Front Neuroendocrinol       Date:  2016-09-20       Impact factor: 8.606

4.  The novel lncRNA CALIC upregulates AXL to promote colon cancer metastasis.

Authors:  Yoshihiro Kawasaki; Masaya Miyamoto; Takeaki Oda; Kosuke Matsumura; Lumi Negishi; Ryuichiro Nakato; Sakiko Suda; Naoko Yokota; Katsuhiko Shirahige; Tetsu Akiyama
Journal:  EMBO Rep       Date:  2019-07-29       Impact factor: 8.807

5.  A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription In trans.

Authors:  Pei-Fang Tsai; Stefania Dell'Orso; Joseph Rodriguez; Karinna O Vivanco; Kyung-Dae Ko; Kan Jiang; Aster H Juan; Aishe A Sarshad; Laura Vian; Michelle Tran; Darawalee Wangsa; A Hongjun Wang; Jelena Perovanovic; Dimitrios Anastasakis; Evelyn Ralston; Thomas Ried; Hong-Wei Sun; Markus Hafner; Daniel R Larson; Vittorio Sartorelli
Journal:  Mol Cell       Date:  2018-07-05       Impact factor: 17.970

6.  LncRNA H19 Regulates BMP2-Induced Hypertrophic Differentiation of Mesenchymal Stem Cells by Promoting Runx2 Phosphorylation.

Authors:  Guangming Dai; Haozhuo Xiao; Chen Zhao; Hong Chen; Junyi Liao; Wei Huang
Journal:  Front Cell Dev Biol       Date:  2020-07-29

Review 7.  Human Accelerated Regions and Other Human-Specific Sequence Variations in the Context of Evolution and Their Relevance for Brain Development.

Authors:  Anastasia Levchenko; Alexander Kanapin; Anastasia Samsonova; Raul R Gainetdinov
Journal:  Genome Biol Evol       Date:  2018-01-01       Impact factor: 3.416

8.  LncRNA CASC9 interacts with CPSF3 to regulate TGF-β signaling in colorectal cancer.

Authors:  Kaili Luo; Jingwen Geng; Qinkai Zhang; Yesha Xu; Xunzhu Zhou; Zheng Huang; Ke-Qing Shi; Chenwei Pan; Jianmin Wu
Journal:  J Exp Clin Cancer Res       Date:  2019-06-11

9.  Chromatin Binding of c-REL and p65 Is Not Limiting for Macrophage IL12B Transcription During Immediate Suppression by Ovarian Carcinoma Ascites.

Authors:  Annika Unger; Florian Finkernagel; Nathalie Hoffmann; Felix Neuhaus; Barbara Joos; Andrea Nist; Thorsten Stiewe; Alexander Visekruna; Uwe Wagner; Silke Reinartz; Sabine Müller-Brüsselbach; Rolf Müller; Till Adhikary
Journal:  Front Immunol       Date:  2018-06-27       Impact factor: 7.561

Review 10.  The Emerging Role of Long Non-Coding RNAs in Plant Defense Against Fungal Stress.

Authors:  Hong Zhang; Huan Guo; Weiguo Hu; Wanquan Ji
Journal:  Int J Mol Sci       Date:  2020-04-11       Impact factor: 5.923

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