| Literature DB >> 27148484 |
Jian Cui1, Jiangtao Luo2, Yeong C Kim1, Carrie Snyder3, Dina Becirovic3, Bradley Downs1, Henry Lynch3, San Ming Wang1.
Abstract
Ku80 is a subunit of the Ku heterodimer that binds to DNA double-strand break ends as part of the non-homologous end joining (NHEJ) pathway. Ku80 is also involved in homologous recombination (HR) via its interaction with BRCA1. Ku80 is encoded by the XRCC5 gene that contains a variable number tandem repeat (VNTR) insertion in its promoter region. Different VNTR genotypes can alter XRCC5 expression and affect Ku80 production, thereby affecting NHEJ and HR pathways. VNTR polymorphism is associated with multiple types of sporadic cancer. In this study, we investigated its potential association with familial breast cancer at the germline level. Using PCR, PAGE, Sanger sequencing, and statistical analyses, we compared VNTR genotypes in the XRCC5 promoter between healthy individuals and three types of familial breast cancer cases: mutated BRCA1 (BRCA1 (+)), mutated BRCA2 (BRCA2 (+)), and wild-type BRCA1/BRCA2 (BRCAx). We observed significant differences of VNTR genotypes between control and BRCA1 (+) group (P < 0.0001) and BRCA2 (+) group (P = 0.0042) but not BRCAx group (P = 0.2185), and the differences were significant between control and cancer-affected BRCA1 (+) cases (P < 0.0001) and BRCA2 (+) cases (P = 0.0092) but not cancer-affected BRCAx cases (P = 0.4251). Further analysis indicated that 2R/2R (OR = 1.94, 95%CI = 1.26-2.95, P = 0.0096) and 2R/1R (OR = 1.58, 95%CI = 1.11-2.26, P = 0.0388) were associated with increased risk but 1R/1R (OR = 0.55, 95%CI = 0.35-0.84, P = 0.0196) and 1R/0R (OR = 0, 95%CI = 0-0.29, P = 0.0012) were associated with decreased risk in cancer-affected BRCA1 (+) group; 2R/1R (OR = 1.94, 95%CI = 1.14-3.32, P = 0.0242) was associated with increased risk in cancer-affected BRCA2 (+) group. No correlation was observed for the altered risk between cancer-affected or -unaffected carriers and between different age of cancer diagnosis in cancer-affected carriers. The frequently observed VNTR association with in BRCA1 (+) and BRCA2 (+) breast cancer group indicates that VNTR polymorphism in the XRCC5 promoter is associated with altered risk of breast cancer in BRCA1 (+) and BRCA2 (+) carriers.Entities:
Keywords: BRCA1; BRCA2; Ku80; VNTR; XRCC5; association; familial breast cancer; promoter
Year: 2016 PMID: 27148484 PMCID: PMC4829605 DOI: 10.3389/fonc.2016.00092
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1VNTR in . (A) VNTR types and position in the promoter of XRCC5. The VNTR is located at −160 bp, with 3R, 2R, 1R, and 0R alleles. Arrows refer to PCR primers used to amplify the VNTR region for genotyping. It also shows higher copies of VNTR lead to lower XRCC5 expression (21–23). (B) Size distribution of different VNTR genotypes. PCR products of different genotypes were separated on an 8% PAGE gel. 2R/2R and 1R/1R had single band, other were heterozygotes with two bands, of which 2R/1R, 1R/0R, and 3R/2R had 21-base differences, and 3R/1R and 2R/0R had 42-base differences; (C) Sanger sequencing validation of 1R/1R and 2R/2R genotypes. It shows the 21-base unit (TGCGCATGCTCGGCGGGAATC) in 1R, and 42-base unit in 2R. 3R/3R DNA was not available for sequencing due to its rarity in human population.
Genotype distribution in three ethnical populations.
| Genotype | Local | Iranian | Chinese |
|---|---|---|---|
| 3R/2R | 0 (0) | 4 (1) | 0 (0) |
| 3R/1R | 1 (1) | 8 (1) | 0 (0) |
| 3R/0R | 1 (1) | 1 (0) | 0 (0) |
| 2R/2R | 16 (16) | 84 (16) | 28 (12) |
| 2R/1R | 50 (50) | 205 (38) | 57 (24) |
| 2R/0R | 5 (5) | 29 (5) | 71 (30) |
| 1R/1R | 22 (22) | 168 (31) | 12 (5) |
| 1R/0R | 5 (5) | 33 (6) | 37 (16) |
| 0R/0R | 0 (0) | 3 (1) | 30 (13) |
| Total | 100 (100) | 535 (100) | 235 (100) |
| Local to Iranian: 0.3774 | |||
| Local to Chinese: <0.0001 | |||
| Iranian to Chinese: <0.0001 | |||
Summary of the .
| Items | |||
|---|---|---|---|
| Unaffected cases | 60 | 29 | 11 |
| Average current age | 56.9 ± 14.4 | 49.1 ± 14.4 | 66.4 ± 15.8 |
| Affected cases | 166 | 69 | 89 |
| Average age at diagnosis | 41.4 ± 10.8 | 43.6 ± 10.3 | 47.7 ± 12.0 |
| Proband | 38 | 15 | 62 |
| Non-proband | 128 | 54 | 27 |
| Breast cancer | 166 | 69 | 89 |
| ER | 22(+)43(−) | 17(+)8(−) | 27(+)6(−) |
| Unknown | 101 | 44 | 56 |
| PR | 17(+)45(−) | 15(+)9(−) | 21(+)9(−) |
| Unknown | 104 | 45 | 59 |
| HER2/neu | 4(+)10(−) | 3(+)4(−) | 6(+)17(−) |
| Unknown | 152 | 62 | 66 |
| Lymph nodes | 38(+)54(−) | 16(+)23(−) | 16(+)16(−) |
| Unknown | 74 | 30 | 57 |
| Left | 56 | 17 | 24 |
| Right | 55 | 25 | 27 |
| Bilateral | 40 | 19 | 8 |
| Unknown | 15 | 8 | 30 |
| Adenocarcinoma not specified | 28 | 7 | 17 |
| Ductual carcinoma | 89 | 43 | 59 |
| Lobular carcinoma | 4 | 4 | 4 |
| Medullary carcinoma | 24 | 3 | |
| Mucoid or colloid carcinoma | 3 | ||
| Unknown | 21 | 12 | 6 |
| Invasive | 148 | 63 | 79 |
| 5 | 2 | 3 | |
| Both invasive and | 6 | 3 | 3 |
| Unknown | 7 | 1 | 4 |
| Ovarian cancer | 21 | 5 | 15 |
| Left | 1 | ||
| Right | 3 | ||
| Bilateral | 4 | 1 | 2 |
| Unknown | 14 | 4 | 12 |
| Fallopian tube | 1 | 1 | |
| Lymph nodes | 7(+)10(−) | 1(+) | 2(+)3(−) |
| Unknown | 4 | 4 | 10 |
| Carcinoma, not specified | 3 | 4 | |
| Clear cell adenocarcinoma | 1 | 1 | |
| Papillary adenocarcinoma | 2 | 2 | 1 |
| Adenocarcinoma (cystadenocarcinoma) | 9 | 1 | 1 |
| Endometrioid adenocarcinoma | 2 | ||
| Serous (cyst)adenocarcinoma | 5 | 1 | 3 |
| Dysgerminoma | 1 | ||
| Unknown | 1 | 5 | |
| Invasive | 20 | 5 | 9 |
| 1 | 1 | ||
| Unknown | 5 |
*Some number in categories may not add up to the total due to incompleteness of tested cases.
Genotype distribution in three types of familial breast cancer.
| Genotype | Control | Familial breast cancer | ||
|---|---|---|---|---|
| Total | 635 (100) | 226 (100) | 98 (100) | 100 (100) |
| 3R/2R | 4 (1) | 0 (0) | 0 (0) | 0 (0) |
| 3R/1R | 9 (1) | 2 (1) | 0 (0) | 0 (0) |
| 3R/0R | 2 (0) | 0 (0) | 0 (0) | 0 (0) |
| 2R/2R | 100 (16) | 61 (27) | 27 (28) | 23 (23) |
| 2R/1R | 255 (40) | 113 (50) | 51 (52) | 48 (48) |
| 2R/0R | 34 (5) | 4 (2) | 1 (1) | 3 (3) |
| 1R/1R | 190 (30) | 45 (20) | 17 (17) | 19 (19) |
| 1R/0R | 38 (6) | 1 (0) | 2 (2) | 7 (7) |
| 0R/0R | 3 (0) | 0 (0) | 0 (0) | 0 (0) |
| <0.0001 | 0.0042 | 0.2185 | ||
Genotypes between cancer-affected and unaffected familial breast cancer.
| Genotype | Control | ||||||
|---|---|---|---|---|---|---|---|
| Cancer | No cancer | Cancer | No cancer | Cancer | No cancer | ||
| Total | 635 (100) | 166 (100) | 60 (100) | 69 (100) | 29 (100) | 89 (100) | 11 (100) |
| 3R/2R | 4 (1) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) |
| 3R/1R | 9 (1) | 2 (1) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) |
| 3R/0R | 2 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) |
| 2R/2R | 100 (16) | 44 (27) | 17 (28) | 17 (25) | 10 (34) | 20 (22) | 3 (27) |
| 2R/1R | 255 (40) | 85 (51) | 28 (47) | 39 (57) | 12 (41) | 41 (46) | 6 (64) |
| 2R/0R | 34 (5) | 3 (2) | 1 (2) | 0 (0) | 1 (3) | 3 (3) | 0 (0) |
| 1R/1R | 190 (30) | 32 (19) | 13 (22) | 13 (19) | 4 (14) | 18 (20) | 1 (9) |
| 1R/0R | 38 (6) | 0 (0) | 1 (2) | 0 (0) | 2 (7) | 7 (8) | 0 (0) |
| 0R/0R | 3 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 0 (0) |
| <0.0001 | 0.2216 | 0.0092 | 0.2748 | 0.4251 | 0.5664 | ||
Comparison between affected and unaffected group.
| Genotype | Affected case | Unaffected case | Odds ratio | 95% CI | Adjusted | |
|---|---|---|---|---|---|---|
| 2R/2R | 45 | 16 | 0.9299 | 0.46–1.96 | 0.8637 | 0.9422 |
| 2R/1R | 87 | 26 | 1.265 | 0.66–2.42 | 0.5403 | 1 |
| 1R/1R | 32 | 13 | 0.7906 | 0.37–1.79 | 0.5664 | 1 |
| 1R/0R | 0 | 1 | 0 | 0–64.08 | 0.2522 | 1 |
| 2R/2R | 17 | 10 | 0.769 | 0.27–2.26 | 0.6281 | 0.9422 |
| 2R/1R | 39 | 12 | 1.8417 | 0.70–4.91 | 0.1904 | 1 |
| 1R/1R | 13 | 4 | 1.3929 | 0.38–6.45 | 0.7707 | 1 |
| 1R/0R | 0 | 2 | 0 | 0–1.44 | 0.0854 | 1 |
| 2R/2R | 20 | 3 | 0.77 | 0.19–3.19 | 0.7118 | 0.9350 |
| 2R/1R | 41 | 6 | 0.71 | 0.20–2.50 | 0.5951 | 1 |
| 1R/1R | 18 | 1 | 2.54 | 0.30–21.12 | 0.6850 | 1 |
| 1R/0R | 7 | 0 | Infinity | 0.23–infinity | 1 | 1 |
Association of VNTR genotypes in .
| Genotype | Control | Affected case | Odds ratio | 95% CI | Adjusted | Unaffected case | Odds ratio | 95% CI | Adjusted | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2R/2R | 100 | 45 | 1.94 | 1.26–2.95 | 0.0016 | 0.0096 | 16 | 2.09 | 1.05–3.97 | 0.0221 | 0.1326 |
| 2R/1R | 255 | 87 | 1.58 | 1.11–2.26 | 0.0087 | 0.0388 | 26 | 1.25 | 0.69–2.23 | 0.3190 | 0.4785 |
| 1R/1R | 190 | 32 | 0.55 | 0.35–0.84 | 0.0049 | 0.0196 | 13 | 0.69 | 0.33–1.35 | 0.2906 | 0.4978 |
| 1R/0R | 38 | 0 | 0 | 0–0.29 | 0.0001 | 0.0012 | 1 | 0.28 | 0.01–1.73 | 0.2414 | 0.5794 |
| 2R/2R | 100 | 17 | 1.75 | 0.97–3.15 | 0.0865 | 0.1038 | 10 | 2.82 | 1.13–6.58 | 0.0174 | 0.2088 |
| 2R/1R | 255 | 39 | 1.94 | 1.14–3.32 | 0.0101 | 0.0242 | 12 | 1.05 | 0.45–2.38 | 1 | 1 |
| 1R/1R | 190 | 13 | 0.54 | 0.27–1.04 | 0.0680 | 0.0907 | 4 | 0.37 | 0.09–1.11 | 0.0632 | 0.1896 |
| 1R/0R | 38 | 0 | 0 | 0–0.73 | 0.0427 | 0.0641 | 2 | 1.16 | 0.13–4.93 | 0.6916 | 0.7545 |
| 2R/2R | 100 | 20 | 1.55 | 0.90–2.67 | 0.1101 | 1 | 3 | 2.01 | 0.52–7.69 | 0.3945 | 0.5257 |
| 2R/1R | 255 | 41 | 1.27 | 0.84–1.82 | 0.2882 | 0.3096 | 6 | 1.79 | 0.54–5.92 | 0.3654 | 0.5481 |
| 1R/1R | 190 | 18 | 0.59 | 0.35–1.02 | 0.0583 | 0.3168 | 1 | 0.23 | 0.03–1.84 | 0.1885 | 0.5655 |
| 1R/0R | 38 | 7 | 1.34 | 0.58–3.10 | 0.4913 | 1 | 0 | 0 | 0–4.75 | 1 | 1 |