Literature DB >> 27147408

Surface Binding of TOTAPOL Assists Structural Investigations of Amyloid Fibrils by Dynamic Nuclear Polarization NMR Spectroscopy.

Madhu Nagaraj1, Trent W Franks1, Siavash Saeidpour2, Tobias Schubeis3, Hartmut Oschkinat1, Christiane Ritter3,4, Barth-Jan van Rossum5.   

Abstract

Dynamic nuclear polarization (DNP) NMR can enhance sensitivity but often comes at the price of a substantial loss of resolution. Two major factors affect spectral quality: low-temperature heterogeneous line broadening and paramagnetic relaxation enhancement (PRE) effects. Investigations by NMR spectroscopy, isothermal titration calorimetry (ITC), and EPR revealed a new substantial affinity of TOTAPOL to amyloid surfaces, very similar to that shown by the fluorescent dye thioflavin-T (ThT). As a consequence, DNP spectra with remarkably good resolution and still reasonable enhancement could be obtained at very low TOTAPOL concentrations, typically 400 times lower than commonly employed. These spectra yielded several long-range constraints that were difficult to obtain without DNP. Our findings open up new strategies for structural studies with DNP NMR spectroscopy on amyloids that can bind the biradical with affinity similar to that shown towards ThT.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; biradical binding; curli amyloid; dynamic nuclear polarization NMR; protein structures

Mesh:

Substances:

Year:  2016        PMID: 27147408     DOI: 10.1002/cbic.201600185

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  12 in total

1.  Line-Broadening in Low-Temperature Solid-State NMR Spectra of Fibrils.

Authors:  Thomas Bauer; Claudio Dotta; Livia Balacescu; Julia Gath; Andreas Hunkeler; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2017-02-04       Impact factor: 2.835

Review 2.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

3.  A biradical-tagged phospholipid as a polarizing agent for solid-state MAS Dynamic Nuclear Polarization NMR of membrane proteins.

Authors:  Daryl B Good; Maxim A Voinov; David Bolton; Meaghan E Ward; Ivan V Sergeyev; Marc Caporini; Peter Scheffer; Andy Lo; Melanie Rosay; Antonin Marek; Leonid S Brown; Alex I Smirnov; Vlad Ladizhansky
Journal:  Solid State Nucl Magn Reson       Date:  2019-04-17       Impact factor: 2.293

Review 4.  Insights into protein misfolding and aggregation enabled by solid-state NMR spectroscopy.

Authors:  Patrick C A van der Wel
Journal:  Solid State Nucl Magn Reson       Date:  2017-10-04       Impact factor: 2.293

5.  Two decades of progress in structural and dynamic studies of amyloids by solid-state NMR.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2019-07-09       Impact factor: 2.229

6.  NMR Signal Quenching from Bound Biradical Affinity Reagents in DNP Samples.

Authors:  Rivkah Rogawski; Ivan V Sergeyev; Yinglu Zhang; Timothy H Tran; Yongjun Li; Liang Tong; Ann E McDermott
Journal:  J Phys Chem B       Date:  2017-11-29       Impact factor: 2.991

7.  Multi-resonant photonic band-gap/saddle coil DNP probehead for static solid state NMR of microliter volume samples.

Authors:  Alexander A Nevzorov; Sergey Milikisiyants; Antonin N Marek; Alex I Smirnov
Journal:  J Magn Reson       Date:  2018-10-23       Impact factor: 2.229

8.  Characterization of photonic band resonators for DNP NMR of thin film samples at 7 T magnetic field.

Authors:  Alexander A Nevzorov; Antonin Marek; Sergey Milikisiyants; Alex I Smirnov
Journal:  J Magn Reson       Date:  2020-12-13       Impact factor: 2.229

Review 9.  Targeted DNP for biomolecular solid-state NMR.

Authors:  Diego Gauto; Ons Dakhlaoui; Ildefonso Marin-Montesinos; Sabine Hediger; Gaël De Paëpe
Journal:  Chem Sci       Date:  2021-03-23       Impact factor: 9.825

10.  Dynamic Nuclear Polarization of Biomembrane Assemblies.

Authors:  Nhi T Tran; Frédéric Mentink-Vigier; Joanna R Long
Journal:  Biomolecules       Date:  2020-08-27
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