Literature DB >> 27141050

Maintenance of Epigenetic Information.

Geneviève Almouzni1, Howard Cedar2.   

Abstract

The genome is subject to a diverse array of epigenetic modifications from DNA methylation to histone posttranslational changes. Many of these marks are somatically stable through cell division. This article focuses on our knowledge of the mechanisms governing the inheritance of epigenetic marks, particularly, repressive ones, when the DNA and chromatin template are duplicated in S phase. This involves the action of histone chaperones, nucleosome-remodeling enzymes, histone and DNA methylation binding proteins, and chromatin-modifying enzymes. Last, the timing of DNA replication is discussed, including the question of whether this constitutes an epigenetic mark that facilitates the propagation of epigenetic marks.
Copyright © 2016 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2016        PMID: 27141050      PMCID: PMC4852805          DOI: 10.1101/cshperspect.a019372

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  176 in total

1.  Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo.

Authors:  Maarten Hoek; Bruce Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-30       Impact factor: 11.205

2.  Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly.

Authors:  Shireen A Sarraf; Irina Stancheva
Journal:  Mol Cell       Date:  2004-08-27       Impact factor: 17.970

3.  A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus.

Authors:  W C Forrester; E Epner; M C Driscoll; T Enver; M Brice; T Papayannopoulou; M Groudine
Journal:  Genes Dev       Date:  1990-10       Impact factor: 11.361

Review 4.  Split decision: what happens to nucleosomes during DNA replication?

Authors:  Anthony T Annunziato
Journal:  J Biol Chem       Date:  2005-01-21       Impact factor: 5.157

5.  Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription.

Authors:  Ray Kit Ng; J B Gurdon
Journal:  Nat Cell Biol       Date:  2007-12-09       Impact factor: 28.824

6.  Allele-specific replication timing of imprinted gene regions.

Authors:  D Kitsberg; S Selig; M Brandeis; I Simon; I Keshet; D J Driscoll; R D Nicholls; H Cedar
Journal:  Nature       Date:  1993-07-29       Impact factor: 49.962

7.  Proliferating cell nuclear antigen associates with histone deacetylase activity, integrating DNA replication and chromatin modification.

Authors:  Snezana Milutinovic; Qianli Zhuang; Moshe Szyf
Journal:  J Biol Chem       Date:  2002-04-02       Impact factor: 5.157

8.  CAF-1 is essential for Drosophila development and involved in the maintenance of epigenetic memory.

Authors:  Yanjun Song; Feng He; Gengqiang Xie; Xiaoyan Guo; Yanjuan Xu; Yixu Chen; Xuehong Liang; Igor Stagljar; Dieter Egli; Jun Ma; Renjie Jiao
Journal:  Dev Biol       Date:  2007-08-29       Impact factor: 3.582

9.  Assembly of SV40 chromatin in a cell-free system from Xenopus eggs.

Authors:  R A Laskey; A D Mills; N R Morris
Journal:  Cell       Date:  1977-02       Impact factor: 41.582

10.  CAF-1 is essential for heterochromatin organization in pluripotent embryonic cells.

Authors:  Martin Houlard; Soizik Berlivet; Aline V Probst; Jean-Pierre Quivy; Patrick Héry; Geneviève Almouzni; Matthieu Gérard
Journal:  PLoS Genet       Date:  2006-09-11       Impact factor: 5.917

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  46 in total

1.  PHF1 Tudor and N-terminal domains synergistically target partially unwrapped nucleosomes to increase DNA accessibility.

Authors:  Matthew D Gibson; Jovylyn Gatchalian; Andrew Slater; Tatiana G Kutateladze; Michael G Poirier
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

Review 2.  Posttranslational mechanisms controlling centromere function and assembly.

Authors:  Shashank Srivastava; Ewelina Zasadzińska; Daniel R Foltz
Journal:  Curr Opin Cell Biol       Date:  2018-04-02       Impact factor: 8.382

Review 3.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

Review 4.  Epigenetic reprogramming of immune cells in injury, repair, and resolution.

Authors:  Katarzyna Placek; Joachim L Schultze; Anna C Aschenbrenner
Journal:  J Clin Invest       Date:  2019-07-22       Impact factor: 14.808

5.  MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones.

Authors:  Sara El Kennani; Annie Adrait; Alexey K Shaytan; Saadi Khochbin; Christophe Bruley; Anna R Panchenko; David Landsman; Delphine Pflieger; Jérôme Govin
Journal:  Epigenetics Chromatin       Date:  2017-01-10       Impact factor: 4.954

Review 6.  A role for Rtt109 in buffering gene-dosage imbalance during DNA replication.

Authors:  Yoav Voichek; Raz Bar-Ziv; Naama Barkai
Journal:  Nucleus       Date:  2016-07-03       Impact factor: 4.197

Review 7.  Pioneer transcription factors shape the epigenetic landscape.

Authors:  Alexandre Mayran; Jacques Drouin
Journal:  J Biol Chem       Date:  2018-03-05       Impact factor: 5.157

Review 8.  Replication-Coupled Nucleosome Assembly in the Passage of Epigenetic Information and Cell Identity.

Authors:  Albert Serra-Cardona; Zhiguo Zhang
Journal:  Trends Biochem Sci       Date:  2017-12-29       Impact factor: 13.807

Review 9.  Epigenetic Determinants of Cancer.

Authors:  Stephen B Baylin; Peter A Jones
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

10.  Probing Nucleosome Stability with a DNA Origami Nanocaliper.

Authors:  Jenny V Le; Yi Luo; Michael A Darcy; Christopher R Lucas; Michelle F Goodwin; Michael G Poirier; Carlos E Castro
Journal:  ACS Nano       Date:  2016-07-06       Impact factor: 15.881

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