Literature DB >> 27120137

Tuning the Protein-Induced Absorption Shifts of Retinal in Engineered Rhodopsin Mimics.

Carl-Mikael Suomivuori1,2, Lucas Lang2, Dage Sundholm1, Ana P Gamiz-Hernandez2, Ville R I Kaila3.   

Abstract

Rational design of light-capturing properties requires understanding the molecular and electronic structure of chromophores in their native chemical or biological environment. We employ here large-scale quantum chemical calculations to study the light-capturing properties of retinal in recently designed human cellular retinol binding protein II (hCRBPII) variants (Wang et al. Science, 2012, 338, 1340-1343). Our calculations show that these proteins absorb across a large part of the visible spectrum by combined polarization and electrostatic effects. These effects stabilize the ground or excited state energy levels of the retinal by perturbing the Schiff-base or β-ionone moieties of the chromophore, which in turn modulates the amount of charge transfer within the molecule. Based on the predicted tuning principles, we design putative in silico mutations that further shift the absorption properties of retinal in hCRBPII towards the ultraviolet and infrared regions of the spectrum.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  QM/MM; computational chemistry; density functional calculations; molecular modeling; protein structures; quantum chemistry

Mesh:

Substances:

Year:  2016        PMID: 27120137     DOI: 10.1002/chem.201505126

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  6 in total

1.  Energetics and dynamics of a light-driven sodium-pumping rhodopsin.

Authors:  Carl-Mikael Suomivuori; Ana P Gamiz-Hernandez; Dage Sundholm; Ville R I Kaila
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-13       Impact factor: 11.205

2.  Benchmarking the Performance of Time-Dependent Density Functional Theory Methods on Biochromophores.

Authors:  Yihan Shao; Ye Mei; Dage Sundholm; Ville R I Kaila
Journal:  J Chem Theory Comput       Date:  2019-12-26       Impact factor: 6.006

3.  Control of Protonated Schiff Base Excited State Decay within Visual Protein Mimics: A Unified Model for Retinal Chromophores.

Authors:  Baptiste Demoulin; Margherita Maiuri; Tetyana Berbasova; James H Geiger; Babak Borhan; Marco Garavelli; Giulio Cerullo; Ivan Rivalta
Journal:  Chemistry       Date:  2021-10-28       Impact factor: 5.236

4.  NeoR, a near-infrared absorbing rhodopsin.

Authors:  Matthias Broser; Anika Spreen; Patrick E Konold; Enrico Peter; Suliman Adam; Veniamin Borin; Igor Schapiro; Reinhard Seifert; John T M Kennis; Yinth Andrea Bernal Sierra; Peter Hegemann
Journal:  Nat Commun       Date:  2020-11-10       Impact factor: 14.919

5.  Resolving Chemical Dynamics in Biological Energy Conversion: Long-Range Proton-Coupled Electron Transfer in Respiratory Complex I.

Authors:  Ville R I Kaila
Journal:  Acc Chem Res       Date:  2021-12-13       Impact factor: 22.384

Review 6.  Far-Red Absorbing Rhodopsins, Insights From Heterodimeric Rhodopsin-Cyclases.

Authors:  Matthias Broser
Journal:  Front Mol Biosci       Date:  2022-01-21
  6 in total

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