| Literature DB >> 27113479 |
Un Jung Kang1, Jennifer G Goldman2, Roy N Alcalay1, Tao Xie3, Paul Tuite4, Claire Henchcliffe5, Penelope Hogarth6, Amy W Amara7, Samuel Frank8, Alice Rudolph9, Cynthia Casaceli9, Howard Andrews1, Katrina Gwinn10, Margaret Sutherland10, Catherine Kopil11, Lona Vincent11, Mark Frasier11.
Abstract
BACKGROUND: Identifying PD-specific biomarkers in biofluids will greatly aid in diagnosis, monitoring progression, and therapeutic interventions. PD biomarkers have been limited by poor discriminatory power, partly driven by heterogeneity of the disease, variability of collection protocols, and focus on de novo, unmedicated patients. Thus, a platform for biomarker discovery and validation in well-characterized, clinically typical, moderate to advanced PD cohorts is critically needed.Entities:
Keywords: DNA; RNA; biomarkers; cerebrospinal fluid; plasma; saliva; urine
Mesh:
Substances:
Year: 2016 PMID: 27113479 PMCID: PMC5021110 DOI: 10.1002/mds.26613
Source DB: PubMed Journal: Mov Disord ISSN: 0885-3185 Impact factor: 10.338
Figure 1BioFIND cohort in the context of other biomarker studies in PD. Darker line (brown) represents progression of clinical rating, and lighter line (orange) shows hypothesized progression of neuronal function that precedes the motor manifestation. BioFIND included PD patients who have 5 to 18 years of PD from motor symptom onset. This complements PPMI subjects who have less than 2 years of PD from the time of diagnosis and are expected to not require medications for additional 6 months. In both BioFIND and PPMI, the average interval from symptom onset to diagnosis is around 2 years.
Figure 2Enrollment and selection of subjects. We excluded 7 PD subjects who did not meet the inclusion criteria of age of onset, disease duration, additional neurological diagnoses, or abnormal labs and 10 HC subjects who had low MoCA scores (<26), other neurological diagnoses (including 3 with tremor and 3 with neuropathies), or abnormal labs. An additional 7 HC subjects were excluded from the analyses of cohort characteristics after enrollment for similar reasons. One subject in each category did not complete the study.
BioFIND specimen sample collection and processing, V1 and V2
| Sample Type | Tube Type | No. of Tubes Supplied in Kit | Processing/Aliquoting | Tubes Shipped to Biorepository |
|---|---|---|---|---|
| Whole blood: for PT/PTT analysis at individual site lab | 2.7‐mL light blue top sodium citrate tube | 1 | NA | 0 |
| Whole blood: for CBC, platelets analysis at individual site lab | 10‐mL Lavender Top EDTA Tube | 1 | NA | 0 |
| Whole blood: for isolation of plasma/pellet | 2‐mL microcentrifuge tubes | 6 | 1‐mL plasma aliquots in each 2‐mL microcentrifuge tube | 3 |
| 10‐mL lavender top EDTA Tube | 1 | Retain blood pellet in EDTA tube | 0 | |
| Whole blood: for extraction of DNA | 8.5‐mL yellow top ACD tube | 1 | NA | 1 |
| Total V1 | 10 | 4 | ||
| Whole blood: for RNA extraction | 2.5‐mL PAXgene tube | 3 | NA | 2 |
| Whole blood: for isolation of plasma/pellet | 2‐mL microcentrifuge tubes | 18 | 1‐mL plasma aliquots in each 2‐mL microcentrifuge tube | 9 |
| 10‐mL lavender top EDTA tube | 3 | Retain blood pellet in EDTA tube | 2 | |
| CSF | 50‐mL conical tube | 1 | Combine and mix total CSF | NA |
| 15‐mL conical tubes | 2 | Divide and spin total CSF | NA | |
| 2‐mL microcentrifuge tubes | 18 | 1‐mL CSF aliquots in each 2‐mL microcentrifuge tube | 10 | |
| 2‐mL purple‐top microcentrifuge tubes | 2 | 1‐mL CSF aliquots in each 2‐mL purple‐top microcentrifuge tube | 0 | |
| Saliva | 50‐mL conical tube | 1 | Processed and centrifuged in 15‐mL conical tubes; aliquoted in 2‐mL microcentrifuge tubes | 6 |
| 15‐mL conical tube | 2 | |||
| 2‐mL microcentrifuge tubes | 10 | |||
| Urine | 50‐mL orange top cup | 1 | Centrifuged and aliquoted in 15‐mL conical tubes | 1 |
| 15‐mL conical tubes | 4 | |||
| Total V2 | 65 | 30 |
ACD, acid citrate dextrose; EDTA, ethylenediaminetetraacetic acid; NA, not applicable; PT/PTT, prothrombin/partial thromboplastin time.
Cohort demographics and clinical characteristics
| PD | HC |
| |
|---|---|---|---|
| Age, years | 68.0 (6.5) | 65.6 (7.4) | 0.015 |
| Male, % | 62.7 | 51.1 | 0.12 |
| Weight, kg | 80.8 (18.1) | 79.1 (17.8) | 0.49 |
| Ethnicity, % Hispanic | 3.4 | 5.7 | 0.50 |
| Race, % white | 93.2 | 89.9 | 0.45 |
| Education, years | 17.0 (3.0) | 17.0 (3.1) | 1.0 |
| Disease duration, years | 8.5 (3.2) | NA | |
| MoCA | 26.8 (2.5) | 27.8 (1.4) | <0.001 |
| RBD, % (questionnaire score ≥5) | 52.5 | 12.5 | <0.001 |
| MDS‐UPDRS Part I | 9.4 (5.6) | NA | |
| MDS‐UPDRS Part II | 11.0 (6.3) | NA | |
| MDS‐UPDRS Part III–ON (V1) | 28.6 (13.7) | 1.6 (2.0) | <0.001 |
| MDS‐UPDRS Part III–OFF (V2) | 39.1 (13.1) | NA | |
| MDS‐UPDRS total (I–III)‐–ON | 49.0 (20.6) | NA | |
| H & Y stage–ON | 2.0 (0.58) | 0.0 (0.0) | <0.001 |
| H & Y stage–OFF | 2.2 (0.67) | NA | |
| TD subtype proportion, % | 33.3 | NA | |
| PIGD subtype, % | 62.3 | ||
| Intermediate subtypes, % | 4.4 |
Values reported as mean (SD), unless otherwise noted; P values are for t tests or chi‐square for categorical variables (statistics given in %).
Summary of biospecimens available
| Available Biospecimen From Unique Subjects | ||||||||
|---|---|---|---|---|---|---|---|---|
| Subjects | DNA | Plasma (V1) | Plasma (V2) | Whole Blood Pellet | RNA | CSF | Saliva | Urine |
| PD (included in analyses) | 117 | 118 | 117 | 115 | 118 | 109 | 23 | 27 |
| HC (included in analyses) | 88 | 88 | 87 | 87 | 87 | 78 | 26 | 27 |
| Excluded (at screening) | 8 | 8 | — | — | — | — | — | — |
| Withdrawn | 2 | 2 | — | — | — | — | — | — |
| Excluded (post hoc) | 7 | 8 | 7 | 7 | 7 | 6 | 1 | 1 |
| Totals | 222 | 224 | 211 | 209 | 212 | 193 | 50 | 55 |
Two unique RNA samples available for 203 of 212 subjects.