Literature DB >> 27113245

Chemical Protein Ubiquitylation with Preservation of the Native Cysteine Residues.

Kun Yang1, Guorui Li1, Ping Gong1, Weijun Gui1, Libo Yuan1, Zhihao Zhuang2.   

Abstract

We report a cysteine-based ligation strategy for generating a monoubiquitylated protein while preserving the native cysteine residues on the acceptor protein. In monoubiquitylation of proliferating cell nuclear antigen (PCNA) this method circumvents the need to mutate the native cysteine residues on PCNA. The chemically ubiquitylated PCNA contains a noncleavable linkage of the same length as the native isopeptide linkage. It also retains the normal function of the native Ub-PCNA in stimulating the ATPase activity of replication factor C (RFC) and lesion bypass synthesis by Polη. This method may be adapted for chemical ubiquitylation of other proteins and for site-specific modification of a target protein at a specific site through sulfhydryl chemistry.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  caged cysteine; chemical ligation; photo-deprotection; protecting groups; protein modifications; ubiquitylation

Mesh:

Substances:

Year:  2016        PMID: 27113245      PMCID: PMC5298353          DOI: 10.1002/cbic.201600042

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  33 in total

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Journal:  Angew Chem Int Ed Engl       Date:  2012-06-13       Impact factor: 15.336

2.  Click chemistry for targeted protein ubiquitylation and ubiquitin chain formation.

Authors:  Daniel Rösner; Tatjana Schneider; Daniel Schneider; Martin Scheffner; Andreas Marx
Journal:  Nat Protoc       Date:  2015-09-24       Impact factor: 13.491

3.  Synthesis of a Bis-thio-acetone (BTA) Analogue of the Lysine Isopeptide Bond and its Application to Investigate the Effects of Ubiquitination and SUMOylation on α-Synuclein Aggregation and Toxicity.

Authors:  Yuka E Lewis; Tharindumala Abeywardana; Yu Hsuan Lin; Ana Galesic; Matthew R Pratt
Journal:  ACS Chem Biol       Date:  2016-01-12       Impact factor: 5.100

4.  A pyrrolysine analogue for site-specific protein ubiquitination.

Authors:  Xin Li; Tomasz Fekner; Jennifer J Ottesen; Michael K Chan
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

5.  Chemically ubiquitylated PCNA as a probe for eukaryotic translesion DNA synthesis.

Authors:  Junjun Chen; Yongxing Ai; Jialiang Wang; Lajos Haracska; Zhihao Zhuang
Journal:  Nat Chem Biol       Date:  2010-03-07       Impact factor: 15.040

6.  Generation of a mono-ubiquitinated PCNA mimic by click chemistry.

Authors:  Silvia Eger; Benoît Castrec; Ulrich Hübscher; Martin Scheffner; Marina Rubini; Andreas Marx
Journal:  Chembiochem       Date:  2011-11-03       Impact factor: 3.164

7.  Convergent versus sequential protein synthesis: the case of ubiquitinated and glycosylated H2B.

Authors:  Mallikanti Seenaiah; Muhammad Jbara; Sachitanand M Mali; Ashraf Brik
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-16       Impact factor: 15.336

8.  Ubiquitylation of yeast proliferating cell nuclear antigen and its implications for translesion DNA synthesis.

Authors:  Lajos Haracska; Ildiko Unk; Louise Prakash; Satya Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-12       Impact factor: 11.205

9.  A novel synthetic chemistry approach to linkage-specific ubiquitin conjugation.

Authors:  Rachel E Morgan; Vijay Chudasama; Paul Moody; Mark E B Smith; Stephen Caddick
Journal:  Org Biomol Chem       Date:  2015-03-04       Impact factor: 3.876

10.  Intrinsic flexibility of ubiquitin on proliferating cell nuclear antigen (PCNA) in translesion synthesis.

Authors:  Richard G Hibbert; Titia K Sixma
Journal:  J Biol Chem       Date:  2012-09-18       Impact factor: 5.157

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  6 in total

1.  Semisynthesis of ubiquitinated histone H2B with a native or nonhydrolyzable linkage.

Authors:  Michael Morgan; Muhammad Jbara; Ashraf Brik; Cynthia Wolberger
Journal:  Methods Enzymol       Date:  2019-02-26       Impact factor: 1.600

2.  Cell-Permeable Activity-Based Ubiquitin Probes Enable Intracellular Profiling of Human Deubiquitinases.

Authors:  Weijun Gui; Christine A Ott; Kun Yang; Jedidiah S Chung; Siqi Shen; Zhihao Zhuang
Journal:  J Am Chem Soc       Date:  2018-09-21       Impact factor: 15.419

3.  Site-Selective Modification of Proteins with Oxetanes.

Authors:  Omar Boutureira; Nuria Martínez-Sáez; Kevin M Brindle; André A Neves; Francisco Corzana; Gonçalo J L Bernardes
Journal:  Chemistry       Date:  2017-03-29       Impact factor: 5.236

4.  Activity-based ubiquitin-protein probes reveal target protein specificity of deubiquitinating enzymes.

Authors:  Ping Gong; Gregory A Davidson; Weijun Gui; Kun Yang; William P Bozza; Zhihao Zhuang
Journal:  Chem Sci       Date:  2018-08-30       Impact factor: 9.825

5.  Crystal structure and activity-based labeling reveal the mechanisms for linkage-specific substrate recognition by deubiquitinase USP9X.

Authors:  Prajwal Paudel; Qi Zhang; Charles Leung; Harrison C Greenberg; Yusong Guo; Yi-Hsuan Chern; Aiping Dong; Yanjun Li; Masoud Vedadi; Zhihao Zhuang; Yufeng Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-26       Impact factor: 11.205

Review 6.  Beyond the Lesion: Back to High Fidelity DNA Synthesis.

Authors:  Joseph D Kaszubowski; Michael A Trakselis
Journal:  Front Mol Biosci       Date:  2022-01-05
  6 in total

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