Literature DB >> 22696461

Chemistry and biology of the ubiquitin signal.

Liat Spasser1, Ashraf Brik.   

Abstract

Ubiquitination is one of the most utilized posttranslational modifications in eukaryotes and is involved in a wide range of cellular processes, but is mostly known as a signal for proteasomal degradation. Recently, it has become clear that the ubiquitin signal is far more complex and is dictated by the ubiquitin component and the substrate. The remarkable diversity of the ubiquitin signaling process has triggered an incredible amount of effort to investigate the role of ubiquitination on biological processes. However, despite more than three decades of studies, several important questions remain unanswered. A major hurdle is the inability to obtain homogeneous ubiquitin bioconjugates in sufficient amounts from cells or by application of the enzymatic machinery. Recent breakthroughs in chemical and semisynthetic strategies, however, offer solutions to these challenges. In this Review, we survey the fundamental biological aspects of the ubiquitin signal and present the emerging non-enzymatic approaches for overcoming these obstacles.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID: 22696461     DOI: 10.1002/anie.201200020

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  39 in total

1.  Click chemistry for targeted protein ubiquitylation and ubiquitin chain formation.

Authors:  Daniel Rösner; Tatjana Schneider; Daniel Schneider; Martin Scheffner; Andreas Marx
Journal:  Nat Protoc       Date:  2015-09-24       Impact factor: 13.491

2.  Comparison of native and non-native ubiquitin oligomers reveals analogous structures and reactivities.

Authors:  Grace H Pham; Ambar S J B Rana; E Nihal Korkmaz; Vivian H Trang; Qiang Cui; Eric R Strieter
Journal:  Protein Sci       Date:  2016-01-12       Impact factor: 6.725

Review 3.  The devil is in the details: comparison between COP9 signalosome (CSN) and the LID of the 26S proteasome.

Authors:  Cindy Meister; Miriam Kolog Gulko; Anna M Köhler; Gerhard H Braus
Journal:  Curr Genet       Date:  2016-02       Impact factor: 3.886

4.  Synthesis of a Bis-thio-acetone (BTA) Analogue of the Lysine Isopeptide Bond and its Application to Investigate the Effects of Ubiquitination and SUMOylation on α-Synuclein Aggregation and Toxicity.

Authors:  Yuka E Lewis; Tharindumala Abeywardana; Yu Hsuan Lin; Ana Galesic; Matthew R Pratt
Journal:  ACS Chem Biol       Date:  2016-01-12       Impact factor: 5.100

5.  Generation of nonhydrolyzable ubiquitin-histone mimics.

Authors:  Lindsey Long; Melonnie Furgason; Tingting Yao
Journal:  Methods       Date:  2014-07-23       Impact factor: 3.608

6.  Nonenzymatic rubylation and ubiquitination of proteins for structural and functional studies.

Authors:  Rajesh K Singh; Adithya Sundar; David Fushman
Journal:  Angew Chem Int Ed Engl       Date:  2014-04-24       Impact factor: 15.336

7.  Intrinsic site-selectivity of ubiquitin dimer formation.

Authors:  Kristen A Andersen; Langdon J Martin; Joel M Prince; Ronald T Raines
Journal:  Protein Sci       Date:  2015-01-15       Impact factor: 6.725

8.  Nonspecific yet decisive: Ubiquitination can affect the native-state dynamics of the modified protein.

Authors:  Yulian Gavrilov; Tzachi Hagai; Yaakov Levy
Journal:  Protein Sci       Date:  2015-06-09       Impact factor: 6.725

Review 9.  Expanding the chemical toolbox for the synthesis of large and uniquely modified proteins.

Authors:  Somasekhar Bondalapati; Muhammad Jbara; Ashraf Brik
Journal:  Nat Chem       Date:  2016-04-22       Impact factor: 24.427

10.  Synthetic polyubiquitinated α-Synuclein reveals important insights into the roles of the ubiquitin chain in regulating its pathophysiology.

Authors:  Mahmood Haj-Yahya; Bruno Fauvet; Yifat Herman-Bachinsky; Mirva Hejjaoui; Sudhir N Bavikar; Subramanian Vedhanarayanan Karthikeyan; Aaron Ciechanover; Hilal A Lashuel; Ashraf Brik
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

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