Literature DB >> 27112209

Defining actionable mutations for oncology therapeutic development.

T Hedley Carr1, Robert McEwen1, Brian Dougherty2, Justin H Johnson2, Jonathan R Dry2, Zhongwu Lai2, Zara Ghazoui3, Naomi M Laing2, Darren R Hodgson3, Francisco Cruzalegui3, Simon J Hollingsworth1, J Carl Barrett2.   

Abstract

Genomic profiling of tumours in patients in clinical trials enables rapid testing of multiple hypotheses to confirm which genomic events determine likely responder groups for targeted agents. A key challenge of this new capability is defining which specific genomic events should be classified as 'actionable' (that is, potentially responsive to a targeted therapy), especially when looking for early indications of patient subgroups likely to be responsive to new drugs. This Opinion article discusses some of the different approaches being taken in early clinical development to define actionable mutations, and describes our strategy to address this challenge in early-stage exploratory clinical trials.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27112209     DOI: 10.1038/nrc.2016.35

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  54 in total

1.  Challenges in initiating and conducting personalized cancer therapy trials: perspectives from WINTHER, a Worldwide Innovative Network (WIN) Consortium trial.

Authors:  J Rodon; J C Soria; R Berger; G Batist; A Tsimberidou; C Bresson; J J Lee; E Rubin; A Onn; R L Schilsky; W H Miller; A M Eggermont; J Mendelsohn; V Lazar; R Kurzrock
Journal:  Ann Oncol       Date:  2015-04-23       Impact factor: 32.976

2.  NCI-MATCH launch highlights new trial design in precision-medicine era.

Authors:  Caroline McNeil
Journal:  J Natl Cancer Inst       Date:  2015-07-03       Impact factor: 13.506

3.  A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer.

Authors:  King Pan Ng; Axel M Hillmer; Charles T H Chuah; Wen Chun Juan; Tun Kiat Ko; Audrey S M Teo; Pramila N Ariyaratne; Naoto Takahashi; Kenichi Sawada; Yao Fei; Sheila Soh; Wah Heng Lee; John W J Huang; John C Allen; Xing Yi Woo; Niranjan Nagarajan; Vikrant Kumar; Anbupalam Thalamuthu; Wan Ting Poh; Ai Leen Ang; Hae Tha Mya; Gee Fung How; Li Yi Yang; Liang Piu Koh; Balram Chowbay; Chia-Tien Chang; Veera S Nadarajan; Wee Joo Chng; Hein Than; Lay Cheng Lim; Yeow Tee Goh; Shenli Zhang; Dianne Poh; Patrick Tan; Ju-Ee Seet; Mei-Kim Ang; Noan-Minh Chau; Quan-Sing Ng; Daniel S W Tan; Manabu Soda; Kazutoshi Isobe; Markus M Nöthen; Tien Y Wong; Atif Shahab; Xiaoan Ruan; Valère Cacheux-Rataboul; Wing-Kin Sung; Eng Huat Tan; Yasushi Yatabe; Hiroyuki Mano; Ross A Soo; Tan Min Chin; Wan-Teck Lim; Yijun Ruan; S Tiong Ong
Journal:  Nat Med       Date:  2012-03-18       Impact factor: 53.440

Review 4.  Prioritizing targets for precision cancer medicine.

Authors:  F Andre; E Mardis; M Salm; J-C Soria; L L Siu; C Swanton
Journal:  Ann Oncol       Date:  2014-10-24       Impact factor: 32.976

Review 5.  Implementing personalized cancer genomics in clinical trials.

Authors:  Richard Simon; Sameek Roychowdhury
Journal:  Nat Rev Drug Discov       Date:  2013-05       Impact factor: 84.694

6.  Comparison of predicted and actual consequences of missense mutations.

Authors:  Lisa A Miosge; Matthew A Field; Yovina Sontani; Vicky Cho; Simon Johnson; Anna Palkova; Bhavani Balakishnan; Rong Liang; Yafei Zhang; Stephen Lyon; Bruce Beutler; Belinda Whittle; Edward M Bertram; Anselm Enders; Christopher C Goodnow; T Daniel Andrews
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-12       Impact factor: 11.205

Review 7.  The cancer genome.

Authors:  Michael R Stratton; Peter J Campbell; P Andrew Futreal
Journal:  Nature       Date:  2009-04-09       Impact factor: 49.962

8.  COSMIC: exploring the world's knowledge of somatic mutations in human cancer.

Authors:  Simon A Forbes; David Beare; Prasad Gunasekaran; Kenric Leung; Nidhi Bindal; Harry Boutselakis; Minjie Ding; Sally Bamford; Charlotte Cole; Sari Ward; Chai Yin Kok; Mingming Jia; Tisham De; Jon W Teague; Michael R Stratton; Ultan McDermott; Peter J Campbell
Journal:  Nucleic Acids Res       Date:  2014-10-29       Impact factor: 16.971

9.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

10.  Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine.

Authors:  Eliezer M Van Allen; Nikhil Wagle; Petar Stojanov; Danielle L Perrin; Kristian Cibulskis; Sara Marlow; Judit Jane-Valbuena; Dennis C Friedrich; Gregory Kryukov; Scott L Carter; Aaron McKenna; Andrey Sivachenko; Mara Rosenberg; Adam Kiezun; Douglas Voet; Michael Lawrence; Lee T Lichtenstein; Jeff G Gentry; Franklin W Huang; Jennifer Fostel; Deborah Farlow; David Barbie; Leena Gandhi; Eric S Lander; Stacy W Gray; Steven Joffe; Pasi Janne; Judy Garber; Laura MacConaill; Neal Lindeman; Barrett Rollins; Philip Kantoff; Sheila A Fisher; Stacey Gabriel; Gad Getz; Levi A Garraway
Journal:  Nat Med       Date:  2014-05-18       Impact factor: 53.440

View more
  47 in total

1.  TP53 Germline Variations Influence the Predisposition and Prognosis of B-Cell Acute Lymphoblastic Leukemia in Children.

Authors:  Maoxiang Qian; Xueyuan Cao; Meenakshi Devidas; Wenjian Yang; Cheng Cheng; Yunfeng Dai; Andrew Carroll; Nyla A Heerema; Hui Zhang; Takaya Moriyama; Julie M Gastier-Foster; Heng Xu; Elizabeth Raetz; Eric Larsen; Naomi Winick; W Paul Bowman; Paul L Martin; Elaine R Mardis; Robert Fulton; Gerard Zambetti; Michael Borowitz; Brent Wood; Kim E Nichols; William L Carroll; Ching-Hon Pui; Charles G Mullighan; William E Evans; Stephen P Hunger; Mary V Relling; Mignon L Loh; Jun J Yang
Journal:  J Clin Oncol       Date:  2018-01-04       Impact factor: 44.544

2.  Ev vivo organ culture as potential prioritization tool for breast cancer targeted therapy.

Authors:  Albert Grinshpun; Nancy Gavert; Roy Zvi Granit; Hadas Masuri; Ittai Ben-Porath; Shani Breuer; Aviad Zick; Shai Rosenberg; Myriam Maoz; Avital Granit; Eli Pikarsky; Ravid Strausmman; Tamar Peretz; Amir Sonnenblick
Journal:  Cancer Biol Ther       Date:  2018-04-13       Impact factor: 4.742

3.  Racial Disparities in the Molecular Landscape of Cancer.

Authors:  Elisabeth I Heath; Filipa Lynce; Joanne Xiu; Angela Ellerbrock; Sandeep K Reddy; Elias Obeid; Stephen V Liu; Aliccia Bollig-Fischer; Duska Separovic; Ari Vanderwalde
Journal:  Anticancer Res       Date:  2018-04       Impact factor: 2.480

4.  mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers.

Authors:  Mulin Jun Li; Hongcheng Yao; Dandan Huang; Huanhuan Liu; Zipeng Liu; Hang Xu; Yiming Qin; Jeanette Prinz; Weiyi Xia; Panwen Wang; Bin Yan; Nhan L Tran; Jean-Pierre Kocher; Pak C Sham; Junwen Wang
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

Review 5.  Clinical Trials in the Genomic Era.

Authors:  Erel Joffe; Alexia Iasonos; Anas Younes
Journal:  J Clin Oncol       Date:  2017-02-13       Impact factor: 44.544

6.  Human pancreatic cancer progression: an anarchy among CCN-siblings.

Authors:  Sushanta K Banerjee; Gargi Maity; Inamul Haque; Arnab Ghosh; Sandipto Sarkar; Vijayalaxmi Gupta; Donald R Campbell; Daniel Von Hoff; Snigdha Banerjee
Journal:  J Cell Commun Signal       Date:  2016-08-19       Impact factor: 5.782

Review 7.  Germline and Somatic Tumor Testing in Gynecologic Cancer Care.

Authors:  Jill Alldredge; Leslie Randall
Journal:  Obstet Gynecol Clin North Am       Date:  2019-03       Impact factor: 2.844

8.  Functional precision cancer medicine-moving beyond pure genomics.

Authors:  Anthony Letai
Journal:  Nat Med       Date:  2017-09-08       Impact factor: 53.440

9.  The Somatic Curation and Interpretation Across Laboratories (SOCIAL) project-current state of solid-tumour variant interpretation for molecular pathology in Canada.

Authors:  T Spence; M A Sukhai; S Kamel-Reid; T L Stockley
Journal:  Curr Oncol       Date:  2019-12-01       Impact factor: 3.677

10.  Bicistronic transfer of CDKN2A and p53 culminates in collaborative killing of human lung cancer cells in vitro and in vivo.

Authors:  Juliana G Xande; Ana P Dias; Rodrigo E Tamura; Mario C Cruz; Bárbara Brito; Robledo A Ferreira; Bryan E Strauss; Eugenia Costanzi-Strauss
Journal:  Gene Ther       Date:  2019-08-22       Impact factor: 5.250

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.