Literature DB >> 26212133

Enzymatically Generated CRISPR Libraries for Genome Labeling and Screening.

Andrew B Lane1, Magdalena Strzelecka2, Andreas Ettinger3, Andrew W Grenfell2, Torsten Wittmann3, Rebecca Heald4.   

Abstract

CRISPR-based technologies have emerged as powerful tools to alter genomes and mark chromosomal loci, but an inexpensive method for generating large numbers of RNA guides for whole genome screening and labeling is lacking. Using a method that permits library construction from any source of DNA, we generated guide libraries that label repetitive loci or a single chromosomal locus in Xenopus egg extracts and show that a complex library can target the E. coli genome at high frequency.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26212133      PMCID: PMC4536113          DOI: 10.1016/j.devcel.2015.06.003

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  28 in total

Review 1.  The Yin and Yang of R-loop biology.

Authors:  Lorenzo Costantino; Douglas Koshland
Journal:  Curr Opin Cell Biol       Date:  2015-05-15       Impact factor: 8.382

2.  Genome-scale CRISPR-Cas9 knockout screening in human cells.

Authors:  Ophir Shalem; Neville E Sanjana; Ella Hartenian; Xi Shi; David A Scott; Tarjei Mikkelson; Dirk Heckl; Benjamin L Ebert; David E Root; John G Doench; Feng Zhang
Journal:  Science       Date:  2013-12-12       Impact factor: 47.728

3.  A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

Authors:  Martin Jinek; Krzysztof Chylinski; Ines Fonfara; Michael Hauer; Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728

4.  Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.

Authors:  Lei S Qi; Matthew H Larson; Luke A Gilbert; Jennifer A Doudna; Jonathan S Weissman; Adam P Arkin; Wendell A Lim
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

5.  Multiplex genome engineering using CRISPR/Cas systems.

Authors:  Le Cong; F Ann Ran; David Cox; Shuailiang Lin; Robert Barretto; Naomi Habib; Patrick D Hsu; Xuebing Wu; Wenyan Jiang; Luciano A Marraffini; Feng Zhang
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

6.  CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes.

Authors:  Luke A Gilbert; Matthew H Larson; Leonardo Morsut; Zairan Liu; Gloria A Brar; Sandra E Torres; Noam Stern-Ginossar; Onn Brandman; Evan H Whitehead; Jennifer A Doudna; Wendell A Lim; Jonathan S Weissman; Lei S Qi
Journal:  Cell       Date:  2013-07-11       Impact factor: 41.582

7.  Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library.

Authors:  Hiroko Koike-Yusa; Yilong Li; E-Pien Tan; Martin Del Castillo Velasco-Herrera; Kosuke Yusa
Journal:  Nat Biotechnol       Date:  2013-12-23       Impact factor: 54.908

8.  RNA-programmed genome editing in human cells.

Authors:  Martin Jinek; Alexandra East; Aaron Cheng; Steven Lin; Enbo Ma; Jennifer Doudna
Journal:  Elife       Date:  2013-01-29       Impact factor: 8.140

9.  A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum.

Authors:  Nathan C Shaner; Gerard G Lambert; Andrew Chammas; Yuhui Ni; Paula J Cranfill; Michelle A Baird; Brittney R Sell; John R Allen; Richard N Day; Maria Israelsson; Michael W Davidson; Jiwu Wang
Journal:  Nat Methods       Date:  2013-03-24       Impact factor: 28.547

10.  Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.

Authors:  Luke A Gilbert; Max A Horlbeck; Britt Adamson; Jacqueline E Villalta; Yuwen Chen; Evan H Whitehead; Carla Guimaraes; Barbara Panning; Hidde L Ploegh; Michael C Bassik; Lei S Qi; Martin Kampmann; Jonathan S Weissman
Journal:  Cell       Date:  2014-10-09       Impact factor: 41.582

View more
  20 in total

1.  Tissue-Specific Gene Inactivation in Xenopus laevis: Knockout of lhx1 in the Kidney with CRISPR/Cas9.

Authors:  Bridget D DeLay; Mark E Corkins; Hannah L Hanania; Matthew Salanga; Jian Min Deng; Norihiro Sudou; Masanori Taira; Marko E Horb; Rachel K Miller
Journal:  Genetics       Date:  2017-11-29       Impact factor: 4.562

2.  Transcription factor Hap5 induces gsh2 expression to enhance 2-phenylethanol tolerance and production in an industrial yeast Candida glycerinogenes.

Authors:  Yuqin Wang; Zhongyuan Zhang; Xinyao Lu; Hong Zong; Bin Zhuge
Journal:  Appl Microbiol Biotechnol       Date:  2020-03-11       Impact factor: 4.813

Review 3.  Expanding the genetic toolkit in Xenopus: Approaches and opportunities for human disease modeling.

Authors:  Panna Tandon; Frank Conlon; J David Furlow; Marko E Horb
Journal:  Dev Biol       Date:  2016-04-22       Impact factor: 3.582

Review 4.  From profiles to function in epigenomics.

Authors:  Stefan H Stricker; Anna Köferle; Stephan Beck
Journal:  Nat Rev Genet       Date:  2016-11-21       Impact factor: 53.242

Review 5.  From Reductionism to Holism: Toward a More Complete View of Development Through Genome Engineering.

Authors:  Rebecca K Delker; Richard S Mann
Journal:  Adv Exp Med Biol       Date:  2017       Impact factor: 2.622

Review 6.  Recent advances in understanding nuclear size and shape.

Authors:  Richik N Mukherjee; Pan Chen; Daniel L Levy
Journal:  Nucleus       Date:  2016-03-10       Impact factor: 4.197

Review 7.  Application and prospects of CRISPR/Cas9-based methods to trace defined genomic sequences in living and fixed plant cells.

Authors:  Solmaz Khosravi; Takayoshi Ishii; Steven Dreissig; Andreas Houben
Journal:  Chromosome Res       Date:  2019-12-03       Impact factor: 5.239

Review 8.  Applications of CRISPR Genome Engineering in Cell Biology.

Authors:  Fangyuan Wang; Lei S Qi
Journal:  Trends Cell Biol       Date:  2016-09-03       Impact factor: 20.808

9.  Centromeric Transcription Regulates Aurora-B Localization and Activation.

Authors:  Michael D Blower
Journal:  Cell Rep       Date:  2016-05-12       Impact factor: 9.423

Review 10.  Imaging of DNA and RNA in Living Eukaryotic Cells to Reveal Spatiotemporal Dynamics of Gene Expression.

Authors:  Hanae Sato; Sulagna Das; Robert H Singer; Maria Vera
Journal:  Annu Rev Biochem       Date:  2020-03-16       Impact factor: 23.643

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.