Literature DB >> 27107644

Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing.

Tassa Saldi1, Michael A Cortazar1, Ryan M Sheridan1, David L Bentley2.   

Abstract

Pre-mRNA maturation frequently occurs at the same time and place as transcription by RNA polymerase II. The co-transcriptionality of mRNA processing has permitted the evolution of mechanisms that functionally couple transcription elongation with diverse events that occur on the nascent RNA. This review summarizes the current understanding of the relationship between transcriptional elongation through a chromatin template and co-transcriptional splicing including alternative splicing decisions that affect the expression of most human genes.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CTD; RNA polymerase II; alternative splicing; kinetic coupling; transcription elongation

Mesh：

Substances：

Year:  2016        PMID： 27107644      PMCID： PMC4893998          DOI： 10.1016/j.jmb.2016.04.017

Source DB:  PubMed          Journal:  J Mol Biol        ISSN： 0022-2836            Impact factor:   5.469


  163 in total

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Review 2.  RNA folding during transcription.

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3.  Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing.

Authors:  Robert J Sims; Scott Millhouse; Chi-Fu Chen; Brian A Lewis; Hediye Erdjument-Bromage; Paul Tempst; James L Manley; Danny Reinberg
Journal:  Mol Cell       Date:  2007-11-30       Impact factor: 17.970

4.  Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases.

Authors:  Bradley Zamft; Lacramioara Bintu; Toyotaka Ishibashi; Carlos Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

Review 5.  The super elongation complex (SEC) family in transcriptional control.

Authors:  Zhuojuan Luo; Chengqi Lin; Ali Shilatifard
Journal:  Nat Rev Mol Cell Biol       Date:  2012-08-16       Impact factor: 94.444

6.  FUS functions in coupling transcription to splicing by mediating an interaction between RNAP II and U1 snRNP.

Authors:  Yong Yu; Robin Reed
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

7.  Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase.

Authors:  Christopher M Weber; Srinivas Ramachandran; Steven Henikoff
Journal:  Mol Cell       Date:  2014-03-06       Impact factor: 17.970

Review 8.  Progression through the RNA polymerase II CTD cycle.

Authors:  Stephen Buratowski
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9.  Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing.

Authors:  Madapura M Pradeepa; Heidi G Sutherland; Jernej Ule; Graeme R Grimes; Wendy A Bickmore
Journal:  PLoS Genet       Date:  2012-05-17       Impact factor: 5.917

10.  Landscape and variation of RNA secondary structure across the human transcriptome.

Authors:  Yue Wan; Kun Qu; Qiangfeng Cliff Zhang; Ryan A Flynn; Ohad Manor; Zhengqing Ouyang; Jiajing Zhang; Robert C Spitale; Michael P Snyder; Eran Segal; Howard Y Chang
Journal:  Nature       Date:  2014-01-30       Impact factor: 49.962
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  100 in total

Review 1.  Nascent RNA and the Coordination of Splicing with Transcription.

Authors:  Karla M Neugebauer
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-08-01       Impact factor: 10.005

2.  A machine learning-based framework for modeling transcription elongation.

Authors:  Peiyuan Feng; An Xiao; Meng Fang; Fangping Wan; Shuya Li; Peng Lang; Dan Zhao; Jianyang Zeng
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

3.  PHF13: A new player involved in RNA polymerase II transcriptional regulation and co-transcriptional splicing.

Authors:  Alisa Fuchs; Marcos Torroba; Sarah Kinkley
Journal:  Transcription       Date:  2017-01-19

Review 4.  Regulatory feedback from nascent RNA to chromatin and transcription.

Authors:  Lenka Skalska; Manuel Beltran-Nebot; Jernej Ule; Richard G Jenner
Journal:  Nat Rev Mol Cell Biol       Date:  2017-03-08       Impact factor: 94.444

5.  Molecular biology: The long and short of a DNA-damage response.

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6.  Human Nup98 regulates the localization and activity of DExH/D-box helicase DHX9.

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7.  [Small interfering RNA-mediated programmed cell death-ligand 1 silencing in human glioma cells enhances human CD8+ T lymphocyte cytotoxicity in vitro].

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Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2018-07-30

Review 8.  Diverse role of survival motor neuron protein.

Authors:  Ravindra N Singh; Matthew D Howell; Eric W Ottesen; Natalia N Singh
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2017-01-15       Impact factor: 4.490

Review 9.  Co-Transcriptional RNA Processing in Plants: Exploring from the Perspective of Polyadenylation.

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10.  Mathematical modeling identifies potential gene structure determinants of co-transcriptional control of alternative pre-mRNA splicing.

Authors:  Jeremy Davis-Turak; Tracy L Johnson; Alexander Hoffmann
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971
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