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Literature DB >> 27104639

Epigenomics meets splicing through the TETs and CTCF.

Ryan J Marina¹, Shalini Oberdoerffer².

Abstract

Entities: Chemical Gene

Keywords: 5caC; 5hmC; Alternative splicing; CTCF; TET1; TET2

Mesh：

Substances：
5-Methylcytosine
Cytosine

Year: 2016 PMID： 27104639 PMCID： PMC4934062 DOI： 10.1080/15384101.2016.1171650

Source DB: PubMed Journal: Cell Cycle ISSN： 1551-4005 Impact factor: 4.534

× No keyword cloud information.

7 in total

1. A conserved role for intragenic DNA methylation in alternative pre-mRNA splicing.

Authors: Shalini Oberdoerffer
Journal: Transcription Date: 2012 May-Jun

2. TET-catalyzed oxidation of intragenic 5-methylcytosine regulates CTCF-dependent alternative splicing.

Authors: Ryan J Marina; David Sturgill; Marc A Bailly; Morgan Thenoz; Garima Varma; Maria F Prigge; Kyster K Nanan; Sanjeev Shukla; Nazmul Haque; Shalini Oberdoerffer
Journal: EMBO J Date: 2015-12-28 Impact factor: 11.598

3. Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives.

Authors: Cornelia G Spruijt; Felix Gnerlich; Arne H Smits; Toni Pfaffeneder; Pascal W T C Jansen; Christina Bauer; Martin Münzel; Mirko Wagner; Markus Müller; Fariha Khan; H Christian Eberl; Anneloes Mensinga; Arie B Brinkman; Konstantin Lephikov; Udo Müller; Jörn Walter; Rolf Boelens; Hugo van Ingen; Heinrich Leonhardt; Thomas Carell; Michiel Vermeulen
Journal: Cell Date: 2013-02-21 Impact factor: 41.582

4. CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.

Authors: Sanjeev Shukla; Ersen Kavak; Melissa Gregory; Masahiko Imashimizu; Bojan Shutinoski; Mikhail Kashlev; Philipp Oberdoerffer; Rickard Sandberg; Shalini Oberdoerffer
Journal: Nature Date: 2011-11-03 Impact factor: 49.962

5. RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee.

Authors: Hongmei Li-Byarlay; Yang Li; Hume Stroud; Suhua Feng; Thomas C Newman; Megan Kaneda; Kirk K Hou; Kim C Worley; Christine G Elsik; Samuel A Wickline; Steven E Jacobsen; Jian Ma; Gene E Robinson
Journal: Proc Natl Acad Sci U S A Date: 2013-07-12 Impact factor: 11.205

6. Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.

Authors: Li Shen; Hao Wu; Dinh Diep; Shinpei Yamaguchi; Ana C D'Alessio; Ho-Lim Fung; Kun Zhang; Yi Zhang
Journal: Cell Date: 2013-04-18 Impact factor: 41.582

7. Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition.

Authors: Alika K Maunakea; Iouri Chepelev; Kairong Cui; Keji Zhao
Journal: Cell Res Date: 2013-08-13 Impact factor: 25.617

7 in total

6 in total

1. Antisense lncRNA Transcription Mediates DNA Demethylation to Drive Stochastic Protocadherin α Promoter Choice.

Authors: Daniele Canzio; Chiamaka L Nwakeze; Adan Horta; Sandy M Rajkumar; Eliot L Coffey; Erin E Duffy; Rachel Duffié; Kevin Monahan; Sean O'Keeffe; Matthew D Simon; Stavros Lomvardas; Tom Maniatis
Journal: Cell Date: 2019-04-04 Impact factor: 41.582

Review 2. The three as: Alternative splicing, alternative polyadenylation and their impact on apoptosis in immune function.

Authors: Davia Blake; Kristen W Lynch
Journal: Immunol Rev Date: 2021-08-08 Impact factor: 12.988

Review 3. RNA Epigenetics: Fine-Tuning Chromatin Plasticity and Transcriptional Regulation, and the Implications in Human Diseases.

Authors: Amber Willbanks; Shaun Wood; Jason X Cheng
Journal: Genes (Basel) Date: 2021-04-22 Impact factor: 4.096