Literature DB >> 27104235

The potential impact of recent developments in three-dimensional quantitative interaction proteomics on structural biology.

Nurcan Tuncbag1, Attila Gursoy2,3, Ozlem Keskin3,4, Ruth Nussinov5,6.   

Abstract

Entities:  

Keywords:  Integrative modeling; assembly modeling; protein interactions; structural bioinformatics

Mesh：

Substances：

Year:  2016        PMID： 27104235      PMCID： PMC4938151          DOI： 10.1080/14789450.2016.1182023

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN： 1478-9450            Impact factor:   3.940


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  26 in total

Review 1.  Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines.

Authors:  Alexander Leitner; Marco Faini; Florian Stengel; Ruedi Aebersold
Journal:  Trends Biochem Sci       Date:  2015-12-01       Impact factor: 13.807

Review 2.  The molecular sociology of the cell.

Authors:  Carol V Robinson; Andrej Sali; Wolfgang Baumeister
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

Review 3.  Prediction of protein-protein interactions: unifying evolution and structure at protein interfaces.

Authors:  Nurcan Tuncbag; Attila Gursoy; Ozlem Keskin
Journal:  Phys Biol       Date:  2011-05-13       Impact factor: 2.583

4.  Structure of full-length p53 tumor suppressor probed by chemical cross-linking and mass spectrometry.

Authors:  Christian Arlt; Christian H Ihling; Andrea Sinz
Journal:  Proteomics       Date:  2015-04-21       Impact factor: 3.984

Review 5.  Predicting Protein-Protein Interactions from the Molecular to the Proteome Level.

Authors:  Ozlem Keskin; Nurcan Tuncbag; Attila Gursoy
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

6.  2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor.

Authors:  Alberto Bartesaghi; Alan Merk; Soojay Banerjee; Doreen Matthies; Xiongwu Wu; Jacqueline L S Milne; Sriram Subramaniam
Journal:  Science       Date:  2015-05-07       Impact factor: 47.728

Review 7.  Visualizing lowly-populated regions of the free energy landscape of macromolecular complexes by paramagnetic relaxation enhancement.

Authors:  G Marius Clore
Journal:  Mol Biosyst       Date:  2008-09-02

8.  Three-dimensional structures of membrane proteins from genomic sequencing.

Authors:  Thomas A Hopf; Lucy J Colwell; Robert Sheridan; Burkhard Rost; Chris Sander; Debora S Marks
Journal:  Cell       Date:  2012-05-10       Impact factor: 41.582

Review 9.  Structural genomics of membrane proteins.

Authors:  Peter Walian; Timothy A Cross; Bing K Jap
Journal:  Genome Biol       Date:  2004-03-15       Impact factor: 13.583

Review 10.  Molecular dynamics simulations: advances and applications.

Authors:  Adam Hospital; Josep Ramon Goñi; Modesto Orozco; Josep L Gelpí
Journal:  Adv Appl Bioinform Chem       Date:  2015-11-19
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  1 in total

1.  Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis.

Authors:  Ruijin Wu; Rahul Prabhu; Aysegul Ozkan; Meera Sitharam
Journal:  PLoS Comput Biol       Date:  2020-10-20       Impact factor: 4.475
  1 in total

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