Literature DB >> 25728495

Structure of full-length p53 tumor suppressor probed by chemical cross-linking and mass spectrometry.

Christian Arlt1, Christian H Ihling1, Andrea Sinz1.   

Abstract

The tumor suppressor p53 presents a great challenge for 3D structural analysis due to its inherent flexibility. In this work, we gained insight into the structure of full-length wild-type human p53 in solution by chemical cross-linking/MS. This approach allowed us obtaining structural information of free wild-type p53 in solution without making use of the ultrastable quadruple p53 variant. The cross-links within one p53 monomer are in good agreement with the small-angle X-ray scattering based model of full-length p53. Our cross-linking data between different p53 molecules in the tetramer however indicate a large degree of flexibility in the C-terminal regulatory domain of full-length p53 in the absence of DNA. The cross-links suggest that the C-terminal regulatory domains are much closer to each other, resulting in a more compact arrangement of the p53 tetramer than perceived by the small-angle X-ray scattering model.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  3D structure; Chemical cross-linking; Intrinsically disordered proteins; MS; Technology; p53

Mesh:

Substances:

Year:  2015        PMID: 25728495     DOI: 10.1002/pmic.201400549

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  17 in total

1.  Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry.

Authors:  Fan Liu; Dirk T S Rijkers; Harm Post; Albert J R Heck
Journal:  Nat Methods       Date:  2015-09-28       Impact factor: 28.547

2.  The potential impact of recent developments in three-dimensional quantitative interaction proteomics on structural biology.

Authors:  Nurcan Tuncbag; Attila Gursoy; Ozlem Keskin; Ruth Nussinov
Journal:  Expert Rev Proteomics       Date:  2016-05       Impact factor: 3.940

3.  Long-range regulation of p53 DNA binding by its intrinsically disordered N-terminal transactivation domain.

Authors:  Alexander S Krois; H Jane Dyson; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-12       Impact factor: 11.205

Review 4.  Are Charge-State Distributions a Reliable Tool Describing Molecular Ensembles of Intrinsically Disordered Proteins by Native MS?

Authors:  Antonino Natalello; Carlo Santambrogio; Rita Grandori
Journal:  J Am Soc Mass Spectrom       Date:  2016-10-11       Impact factor: 3.109

5.  Epitope and Paratope Mapping of PD-1/Nivolumab by Mass Spectrometry-Based Hydrogen-Deuterium Exchange, Cross-linking, and Molecular Docking.

Authors:  Mengru Mira Zhang; Richard Y-C Huang; Brett R Beno; Ekaterina G Deyanova; Jing Li; Guodong Chen; Michael L Gross
Journal:  Anal Chem       Date:  2020-06-10       Impact factor: 6.986

6.  Mapping low-affinity/high-specificity peptide-protein interactions using ligand-footprinting mass spectrometry.

Authors:  Benjamin W Parker; Edward J Goncz; David T Krist; Alexander V Statsyuk; Alexey I Nesvizhskii; Eric L Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-02       Impact factor: 11.205

7.  Full-length p53 tetramer bound to DNA and its quaternary dynamics.

Authors:  Ö Demir; P U Ieong; R E Amaro
Journal:  Oncogene       Date:  2016-09-19       Impact factor: 9.867

Review 8.  The Tail That Wags the Dog: How the Disordered C-Terminal Domain Controls the Transcriptional Activities of the p53 Tumor-Suppressor Protein.

Authors:  Oleg Laptenko; David R Tong; James Manfredi; Carol Prives
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

9.  Post-translational regulation of p53 function through 20S proteasome-mediated cleavage.

Authors:  Hilla Solomon; Bastian Bräuning; Irit Fainer; Gili Ben-Nissan; Stav Rabani; Naomi Goldfinger; Oren Moscovitz; Zippora Shakked; Varda Rotter; Michal Sharon
Journal:  Cell Death Differ       Date:  2017-09-08       Impact factor: 15.828

10.  The Crystal Structure of the R280K Mutant of Human p53 Explains the Loss of DNA Binding.

Authors:  Ana Sara Gomes; Filipa Trovão; Benedita Andrade Pinheiro; Filipe Freire; Sara Gomes; Carla Oliveira; Lucília Domingues; Maria João Romão; Lucília Saraiva; Ana Luísa Carvalho
Journal:  Int J Mol Sci       Date:  2018-04-13       Impact factor: 5.923

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