Literature DB >> 27102674

Expanding the chemical toolbox for the synthesis of large and uniquely modified proteins.

Somasekhar Bondalapati1, Muhammad Jbara1, Ashraf Brik1.   

Abstract

Methods to prepare proteins that include a specific modification at a desired position are essential for understanding their cellular functions and physical properties in living systems. Chemical protein synthesis, which relies on the chemoselective ligation of unprotected peptides, enables the preparation of modified proteins that are not easily fabricated by other methods. In contrast to recombinant approaches, chemical synthesis can be used to prepare protein analogues such as D-proteins, which are useful in protein structure determination and the discovery of novel therapeutics. Post-translationally modifying proteins is another example where chemical protein synthesis proved itself as a powerful approach for preparing samples with high homogeneity and in workable quantities. In this Review, we discuss the basic principles of the field, focusing on novel chemoselective peptide ligation approaches such as native chemical ligation and the recent advances based on this method with a proven record of success in the synthesis of highly important protein targets.

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Year:  2016        PMID: 27102674     DOI: 10.1038/nchem.2476

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  90 in total

1.  Extending synthetic access to proteins with a removable acyl transfer auxiliary.

Authors:  John Offer; C N C Boddy; Philip E Dawson
Journal:  J Am Chem Soc       Date:  2002-05-01       Impact factor: 15.419

2.  Chemical synthesis of homogeneous human glycosyl-interferon-β that exhibits potent antitumor activity in vivo.

Authors:  Izumi Sakamoto; Katsunari Tezuka; Kazuhiro Fukae; Kazuyuki Ishii; Keisuke Taduru; Masatoshi Maeda; Masaki Ouchi; Kenta Yoshida; Yuri Nambu; Jun Igarashi; Naohiro Hayashi; Takashi Tsuji; Yasuhiro Kajihara
Journal:  J Am Chem Soc       Date:  2012-03-15       Impact factor: 15.419

3.  Preformed selenoesters enable rapid native chemical ligation at intractable sites.

Authors:  Thomas Durek; Paul F Alewood
Journal:  Angew Chem Int Ed Engl       Date:  2011-10-13       Impact factor: 15.336

4.  Free-radical-based, specific desulfurization of cysteine: a powerful advance in the synthesis of polypeptides and glycopolypeptides.

Authors:  Qian Wan; Samuel J Danishefsky
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Reconstitution of the catalytic core of F-ATPase (αβ)3γ from Escherichia coli using chemically synthesized subunit γ.

Authors:  Frank Wintermann; Siegfried Engelbrecht
Journal:  Angew Chem Int Ed Engl       Date:  2012-12-04       Impact factor: 15.336

6.  Convergent chemical synthesis of proteins by ligation of peptide hydrazides.

Authors:  Ge-Min Fang; Jia-Xing Wang; Lei Liu
Journal:  Angew Chem Int Ed Engl       Date:  2012-09-11       Impact factor: 15.336

7.  Expedient total synthesis of small to medium-sized membrane proteins via Fmoc chemistry.

Authors:  Ji-Shen Zheng; Mu Yu; Yun-Kun Qi; Shan Tang; Fei Shen; Zhi-Peng Wang; Liang Xiao; Longhua Zhang; Chang-Lin Tian; Lei Liu
Journal:  J Am Chem Soc       Date:  2014-02-21       Impact factor: 15.419

8.  Convergent versus sequential protein synthesis: the case of ubiquitinated and glycosylated H2B.

Authors:  Mallikanti Seenaiah; Muhammad Jbara; Sachitanand M Mali; Ashraf Brik
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-16       Impact factor: 15.336

9.  Development of new thioester equivalents for protein chemical synthesis.

Authors:  Ji-Shen Zheng; Shan Tang; Yi-Chao Huang; Lei Liu
Journal:  Acc Chem Res       Date:  2013-05-23       Impact factor: 22.384

10.  Chemical synthesis of biologically active monoglycosylated GM2-activator protein analogue using N-sulfanylethylanilide peptide.

Authors:  Kohei Sato; Akira Shigenaga; Keisuke Kitakaze; Ken Sakamoto; Daisuke Tsuji; Kohji Itoh; Akira Otaka
Journal:  Angew Chem Int Ed Engl       Date:  2013-06-13       Impact factor: 15.336

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  52 in total

Review 1.  Arylation Chemistry for Bioconjugation.

Authors:  Chi Zhang; Ekaterina V Vinogradova; Alexander M Spokoyny; Stephen L Buchwald; Bradley L Pentelute
Journal:  Angew Chem Int Ed Engl       Date:  2019-02-15       Impact factor: 15.336

2.  Chemical synthesis of membrane proteins by the removable backbone modification method.

Authors:  Shan Tang; Chao Zuo; Dong-Liang Huang; Xiao-Ying Cai; Long-Hua Zhang; Chang-Lin Tian; Ji-Shen Zheng; Lei Liu
Journal:  Nat Protoc       Date:  2017-11-16       Impact factor: 13.491

3.  Diverse fate of ubiquitin chain moieties: The proximal is degraded with the target, and the distal protects the proximal from removal and recycles.

Authors:  Hao Sun; Sachitanand M Mali; Sumeet K Singh; Roman Meledin; Ashraf Brik; Yong Tae Kwon; Yelena Kravtsova-Ivantsiv; Beatrice Bercovich; Aaron Ciechanover
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-13       Impact factor: 11.205

Review 4.  Oligosaccharide Synthesis and Translational Innovation.

Authors:  Larissa Krasnova; Chi-Huey Wong
Journal:  J Am Chem Soc       Date:  2019-02-18       Impact factor: 15.419

Review 5.  Building membrane nanopores.

Authors:  Stefan Howorka
Journal:  Nat Nanotechnol       Date:  2017-07-06       Impact factor: 39.213

6.  Redox-based reagents for chemoselective methionine bioconjugation.

Authors:  Shixian Lin; Xiaoyu Yang; Shang Jia; Amy M Weeks; Michael Hornsby; Peter S Lee; Rita V Nichiporuk; Anthony T Iavarone; James A Wells; F Dean Toste; Christopher J Chang
Journal:  Science       Date:  2017-02-10       Impact factor: 47.728

Review 7.  Insights into the Molecular Mechanisms of Alzheimer's and Parkinson's Diseases with Molecular Simulations: Understanding the Roles of Artificial and Pathological Missense Mutations in Intrinsically Disordered Proteins Related to Pathology.

Authors:  Orkid Coskuner-Weber; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2018-01-24       Impact factor: 5.923

8.  Semisynthesis of ubiquitinated histone H2B with a native or nonhydrolyzable linkage.

Authors:  Michael Morgan; Muhammad Jbara; Ashraf Brik; Cynthia Wolberger
Journal:  Methods Enzymol       Date:  2019-02-26       Impact factor: 1.600

Review 9.  Enhancing native chemical ligation for challenging chemical protein syntheses.

Authors:  Riley J Giesler; Patrick W Erickson; Michael S Kay
Journal:  Curr Opin Chem Biol       Date:  2020-07-31       Impact factor: 8.822

10.  Total chemical synthesis of histones and their analogs, assisted by native chemical ligation and palladium complexes.

Authors:  Suman Kumar Maity; Muhammad Jbara; Guy Mann; Guy Kamnesky; Ashraf Brik
Journal:  Nat Protoc       Date:  2017-10-05       Impact factor: 13.491

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