Literature DB >> 27091567

Necessary and sufficient conditions for protocell growth.

Erwan Bigan1,2, Loïc Paulevé3, Jean-Marc Steyaert4, Stéphane Douady5.   

Abstract

We consider a generic protocell model consisting of any conservative chemical reaction network embedded within a membrane. The membrane results from the self-assembly of a membrane precursor and is semi-permeable to some nutrients. Nutrients are metabolized into all other species including the membrane precursor, and the membrane grows in area and the protocell in volume. Faithful replication through cell growth and division requires a doubling of both cell volume and surface area every division time (thus leading to a periodic surface area-to-volume ratio) and also requires periodic concentrations of the cell constituents. Building upon these basic considerations, we prove necessary and sufficient conditions pertaining to the chemical reaction network for such a regime to be met. A simple necessary condition is that every moiety must be fed. A stronger necessary condition implies that every siphon must be either fed, or connected to species outside the siphon through a pass reaction capable of transferring net positive mass into the siphon. And in the case of nutrient uptake through passive diffusion and of constant surface area-to-volume ratio, a sufficient condition for the existence of a fixed point is that every siphon be fed. These necessary and sufficient conditions hold for any chemical reaction kinetics, membrane parameters or nutrient flux diffusion constants.

Keywords:  Chemical reaction network; Persistence; Protocell; Siphons

Mesh:

Year:  2016        PMID: 27091567     DOI: 10.1007/s00285-016-0998-0

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  28 in total

1.  Interdependence of cell growth and gene expression: origins and consequences.

Authors:  Matthew Scott; Carl W Gunderson; Eduard M Mateescu; Zhongge Zhang; Terence Hwa
Journal:  Science       Date:  2010-11-19       Impact factor: 47.728

2.  Filamentation as primitive growth mode?

Authors:  Erwan Bigan; Jean-Marc Steyaert; Stéphane Douady
Journal:  Phys Biol       Date:  2015-12-31       Impact factor: 2.583

3.  A framework for whole-cell mathematical modeling.

Authors:  Jeffrey J Morgan; Ivan V Surovtsev; Paul A Lindahl
Journal:  J Theor Biol       Date:  2004-12-21       Impact factor: 2.691

4.  Whole-cell modeling framework in which biochemical dynamics impact aspects of cellular geometry.

Authors:  Ivan V Surovstev; Jeffrey J Morgan; Paul A Lindahl
Journal:  J Theor Biol       Date:  2006-09-07       Impact factor: 2.691

5.  Growth states of catalytic reaction networks exhibiting energy metabolism.

Authors:  Yohei Kondo; Kunihiko Kaneko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-07-28

6.  Mechanistic links between cellular trade-offs, gene expression, and growth.

Authors:  Andrea Y Weiße; Diego A Oyarzún; Vincent Danos; Peter S Swain
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-18       Impact factor: 11.205

7.  Theoretical conditions for the stationary reproduction of model protocells.

Authors:  Fabio Mavelli; Kepa Ruiz-Mirazo
Journal:  Integr Biol (Camb)       Date:  2013-02       Impact factor: 2.192

Review 8.  Structure, function, and regulation of the mammalian facilitative glucose transporter gene family.

Authors:  A L Olson; J E Pessin
Journal:  Annu Rev Nutr       Date:  1996       Impact factor: 11.848

Review 9.  Ins and outs of glucose transport systems in eubacteria.

Authors:  Knut Jahreis; Elisângela F Pimentel-Schmitt; Reinhold Brückner; Fritz Titgemeyer
Journal:  FEMS Microbiol Rev       Date:  2008-07-16       Impact factor: 16.408

10.  A coarse-grained biophysical model of E. coli and its application to perturbation of the rRNA operon copy number.

Authors:  Arbel D Tadmor; Tsvi Tlusty
Journal:  PLoS Comput Biol       Date:  2008-05-02       Impact factor: 4.475

View more
  2 in total

Review 1.  Mathematical modelling of microbes: metabolism, gene expression and growth.

Authors:  Hidde de Jong; Stefano Casagranda; Nils Giordano; Eugenio Cinquemani; Delphine Ropers; Johannes Geiselmann; Jean-Luc Gouzé
Journal:  J R Soc Interface       Date:  2017-11       Impact factor: 4.118

2.  Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World.

Authors:  Wim Hordijk; Jonathan Naylor; Natalio Krasnogor; Harold Fellermann
Journal:  Life (Basel)       Date:  2018-08-18
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.