Literature DB >> 23233152

Theoretical conditions for the stationary reproduction of model protocells.

Fabio Mavelli1, Kepa Ruiz-Mirazo.   

Abstract

In previous works we have explored the dynamics of chemically reacting proto-cellular systems, under different experimental conditions and kinetic parameters, by means of our stochastic simulation platform 'ENVIRONMENT'. In this paper we, somehow, turn the question around: accepting some broad modeling assumptions, we investigate the conditions under which simple protocells will spontaneously settle into a stationary reproducing regime, characterized by a regular growth/division cycle and the maintenance of a certain standard size and chemical composition across generations. In the first part, starting from purely geometric considerations, the condition for stationary reproduction of a protocell will be expressed in terms of a growth control coefficient (γ). Then, an explicit relationship, the osmotic synchronization condition, will be analytically derived under a set of kinetic simplifications and taking into account the osmotic pressure balance operating across the protocell membrane. In the second part of the paper, this general condition that constrains different molecular/kinetic parameters and features of the system (reaction rates, permeability coefficients, metabolite concentrations, system volume) will be applied to different cases of self-producing vesicles, predicting the stationary protocell size or lifetime. Finally, in order to test the validity of our analytic results and predictions, the case study is contrasted with data obtained through both stochastic and deterministic computational algorithms.

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Year:  2013        PMID: 23233152     DOI: 10.1039/c2ib20222k

Source DB:  PubMed          Journal:  Integr Biol (Camb)        ISSN: 1757-9694            Impact factor:   2.192


  13 in total

1.  Protocell design through modular compartmentalization.

Authors:  David Miller; Paula J Booth; John M Seddon; Richard H Templer; Robert V Law; Rudiger Woscholski; Oscar Ces; Laura M C Barter
Journal:  J R Soc Interface       Date:  2013-08-07       Impact factor: 4.118

2.  The origin and early evolution of life in chemical composition space.

Authors:  David A Baum
Journal:  J Theor Biol       Date:  2018-08-12       Impact factor: 2.691

3.  Necessary and sufficient conditions for protocell growth.

Authors:  Erwan Bigan; Loïc Paulevé; Jean-Marc Steyaert; Stéphane Douady
Journal:  J Math Biol       Date:  2016-04-18       Impact factor: 2.259

Review 4.  Synthetic transitions: towards a new synthesis.

Authors:  Ricard Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-08-19       Impact factor: 6.237

Review 5.  Shape Deformation, Budding and Division of Giant Vesicles and Artificial Cells: A Review.

Authors:  Ylenia Miele; Gábor Holló; István Lagzi; Federico Rossi
Journal:  Life (Basel)       Date:  2022-06-06

6.  Emergent chemical behavior in variable-volume protocells.

Authors:  Ben Shirt-Ediss; Ricard V Solé; Kepa Ruiz-Mirazo
Journal:  Life (Basel)       Date:  2015-01-13

7.  Modelling lipid competition dynamics in heterogeneous protocell populations.

Authors:  Ben Shirt-Ediss; Kepa Ruiz-Mirazo; Fabio Mavelli; Ricard V Solé
Journal:  Sci Rep       Date:  2014-07-14       Impact factor: 4.379

8.  Growth and division in a dynamic protocell model.

Authors:  Marco Villani; Alessandro Filisetti; Alex Graudenzi; Chiara Damiani; Timoteo Carletti; Roberto Serra
Journal:  Life (Basel)       Date:  2014-12-03

9.  Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research.

Authors:  Ben Shirt-Ediss; Sara Murillo-Sánchez; Kepa Ruiz-Mirazo
Journal:  Beilstein J Org Chem       Date:  2017-07-13       Impact factor: 2.883

10.  Permeability-driven selection in a semi-empirical protocell model: the roots of prebiotic systems evolution.

Authors:  Gabriel Piedrafita; Pierre-Alain Monnard; Fabio Mavelli; Kepa Ruiz-Mirazo
Journal:  Sci Rep       Date:  2017-06-09       Impact factor: 4.379

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