Literature DB >> 27089971

CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation.

Matthias Merkenschlager1, Elphège P Nora2.   

Abstract

Genome function, replication, integrity, and propagation rely on the dynamic structural organization of chromosomes during the cell cycle. Genome folding in interphase provides regulatory segmentation for appropriate transcriptional control, facilitates ordered genome replication, and contributes to genome integrity by limiting illegitimate recombination. Here, we review recent high-resolution chromosome conformation capture and functional studies that have informed models of the spatial and regulatory compartmentalization of mammalian genomes, and discuss mechanistic models for how CTCF and cohesin control the functional architecture of mammalian chromosomes.

Entities:  

Keywords:  CTCF; TAD; chromosome conformation capture; cohesin; gene regulation; genome folding; loop extrusion

Mesh:

Substances:

Year:  2016        PMID: 27089971     DOI: 10.1146/annurev-genom-083115-022339

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  192 in total

Review 1.  Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.

Authors:  Gerson Rothschild; Uttiya Basu
Journal:  Trends Genet       Date:  2017-01-10       Impact factor: 11.639

Review 2.  The Many Roles of Cohesin in Drosophila Gene Transcription.

Authors:  Dale Dorsett
Journal:  Trends Genet       Date:  2019-05-23       Impact factor: 11.639

3.  Architectural protein Pita cooperates with dCTCF in organization of functional boundaries in Bithorax complex.

Authors:  Olga Kyrchanova; Nikolay Zolotarev; Vladic Mogila; Oksana Maksimenko; Paul Schedl; Pavel Georgiev
Journal:  Development       Date:  2017-06-15       Impact factor: 6.868

Review 4.  Regulation of disease-associated gene expression in the 3D genome.

Authors:  Peter Hugo Lodewijk Krijger; Wouter de Laat
Journal:  Nat Rev Mol Cell Biol       Date:  2016-11-09       Impact factor: 94.444

Review 5.  Regulation and dysregulation of spatial chromatin structure in the central nervous system.

Authors:  Yuki Fujita
Journal:  Anat Sci Int       Date:  2021-01-03       Impact factor: 1.741

Review 6.  The torments of the cohesin ring.

Authors:  Alap P Chavda; Keven Ang; Dmitri Ivanov
Journal:  Nucleus       Date:  2017-02-27       Impact factor: 4.197

7.  CTCF and cohesin regulate chromatin loop stability with distinct dynamics.

Authors:  Anders S Hansen; Iryna Pustova; Claudia Cattoglio; Robert Tjian; Xavier Darzacq
Journal:  Elife       Date:  2017-05-03       Impact factor: 8.140

8.  Promoter interactions direct chromatin folding in embryonic stem cells.

Authors:  Swastika Sanyal; Lucia Molnarova; Juraj Gregan
Journal:  Nat Struct Mol Biol       Date:  2017-06-06       Impact factor: 15.369

Review 9.  New insights into cohesin loading.

Authors:  Ireneusz Litwin; Robert Wysocki
Journal:  Curr Genet       Date:  2017-06-19       Impact factor: 3.886

10.  Chromatin Domain Organization of the TCRb Locus and Its Perturbation by Ectopic CTCF Binding.

Authors:  Pratishtha Rawat; Manisha Jalan; Ananya Sadhu; Abhilasha Kanaujia; Madhulika Srivastava
Journal:  Mol Cell Biol       Date:  2017-04-14       Impact factor: 4.272

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