Literature DB >> 27088887

Protein dynamics and function from solution state NMR spectroscopy.

Michael Kovermann1, Per Rogne1, Magnus Wolf-Watz1.   

Abstract

It is well-established that dynamics are central to protein function; their importance is implicitly acknowledged in the principles of the Monod, Wyman and Changeux model of binding cooperativity, which was originally proposed in 1965. Nowadays the concept of protein dynamics is formulated in terms of the energy landscape theory, which can be used to understand protein folding and conformational changes in proteins. Because protein dynamics are so important, a key to understanding protein function at the molecular level is to design experiments that allow their quantitative analysis. Nuclear magnetic resonance (NMR) spectroscopy is uniquely suited for this purpose because major advances in theory, hardware, and experimental methods have made it possible to characterize protein dynamics at an unprecedented level of detail. Unique features of NMR include the ability to quantify dynamics (i) under equilibrium conditions without external perturbations, (ii) using many probes simultaneously, and (iii) over large time intervals. Here we review NMR techniques for quantifying protein dynamics on fast (ps-ns), slow (μs-ms), and very slow (s-min) time scales. These techniques are discussed with reference to some major discoveries in protein science that have been made possible by NMR spectroscopy.

Mesh:

Substances:

Year:  2016        PMID: 27088887     DOI: 10.1017/S0033583516000019

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  43 in total

1.  Crowding-Induced Elongated Conformation of Urea-Unfolded Apoazurin: Investigating the Role of Crowder Shape in Silico.

Authors:  Fabio C Zegarra; Dirar Homouz; Andrei G Gasic; Lucas Babel; Michael Kovermann; Pernilla Wittung-Stafshede; Margaret S Cheung
Journal:  J Phys Chem B       Date:  2019-04-23       Impact factor: 2.991

Review 2.  Advances in coarse-grained modeling of macromolecular complexes.

Authors:  Alexander J Pak; Gregory A Voth
Journal:  Curr Opin Struct Biol       Date:  2018-11-30       Impact factor: 6.809

3.  β-Lactamase of Mycobacterium tuberculosis Shows Dynamics in the Active Site That Increase upon Inhibitor Binding.

Authors:  Wouter Elings; Anamika Gaur; Anneloes J Blok; Monika Timmer; Hugo van Ingen; Marcellus Ubbink
Journal:  Antimicrob Agents Chemother       Date:  2020-02-21       Impact factor: 5.191

Review 4.  Biogenesis, quality control, and structural dynamics of proteins as explored in living cells via site-directed photocrosslinking.

Authors:  Xinmiao Fu; Zengyi Chang
Journal:  Protein Sci       Date:  2019-05-10       Impact factor: 6.725

Review 5.  Applications of NMR and computational methodologies to study protein dynamics.

Authors:  Chitra Narayanan; Khushboo Bafna; Louise D Roux; Pratul K Agarwal; Nicolas Doucet
Journal:  Arch Biochem Biophys       Date:  2017-05-05       Impact factor: 4.013

6.  Cracking the allosteric code of NMR chemical shifts.

Authors:  Bryan VanSchouwen; Giuseppe Melacini
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-10       Impact factor: 11.205

7.  Solution structure and functional investigation of human guanylate kinase reveals allosteric networking and a crucial role for the enzyme in cancer.

Authors:  Nazimuddin Khan; Parag P Shah; David Ban; Pablo Trigo-Mouriño; Marta G Carneiro; Lynn DeLeeuw; William L Dean; John O Trent; Levi J Beverly; Manfred Konrad; Donghan Lee; T Michael Sabo
Journal:  J Biol Chem       Date:  2019-06-14       Impact factor: 5.157

8.  Urea-Dependent Adenylate Kinase Activation following Redistribution of Structural States.

Authors:  Per Rogne; Magnus Wolf-Watz
Journal:  Biophys J       Date:  2016-10-04       Impact factor: 4.033

9.  The Michaelis Complex of Arginine Kinase Samples the Transition State at a Frequency That Matches the Catalytic Rate.

Authors:  Yu Peng; Alexandar L Hansen; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Michael S Chapman; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2017-03-27       Impact factor: 15.419

10.  Comparison of NMR and crystal structures of membrane proteins and computational refinement to improve model quality.

Authors:  Julia Koehler Leman; Andrew R D'Avino; Yash Bhatnagar; Jeffrey J Gray
Journal:  Proteins       Date:  2017-11-08
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.