Literature DB >> 27087500

Evolution by gene loss.

Ricard Albalat1, Cristian Cañestro1.   

Abstract

The recent increase in genomic data is revealing an unexpected perspective of gene loss as a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This novel perspective of gene loss is raising new fundamental questions. How relevant has gene loss been in the divergence of phyla? How do genes change from being essential to dispensable and finally to being lost? Is gene loss mostly neutral, or can it be an effective way of adaptation? These questions are addressed, and insights are discussed from genomic studies of gene loss in populations and their relevance in evolutionary biology and biomedicine.

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Year:  2016        PMID: 27087500     DOI: 10.1038/nrg.2016.39

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  206 in total

Review 1.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

2.  Modeling gene and genome duplications in eukaryotes.

Authors:  Steven Maere; Stefanie De Bodt; Jeroen Raes; Tineke Casneuf; Marc Van Montagu; Martin Kuiper; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

3.  Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.

Authors:  France Denoeud; Simon Henriet; Sutada Mungpakdee; Jean-Marc Aury; Corinne Da Silva; Henner Brinkmann; Jana Mikhaleva; Lisbeth Charlotte Olsen; Claire Jubin; Cristian Cañestro; Jean-Marie Bouquet; Gemma Danks; Julie Poulain; Coen Campsteijn; Marcin Adamski; Ismael Cross; Fekadu Yadetie; Matthieu Muffato; Alexandra Louis; Stephen Butcher; Georgia Tsagkogeorga; Anke Konrad; Sarabdeep Singh; Marit Flo Jensen; Evelyne Huynh Cong; Helen Eikeseth-Otteraa; Benjamin Noel; Véronique Anthouard; Betina M Porcel; Rym Kachouri-Lafond; Atsuo Nishino; Matteo Ugolini; Pascal Chourrout; Hiroki Nishida; Rein Aasland; Snehalata Huzurbazar; Eric Westhof; Frédéric Delsuc; Hans Lehrach; Richard Reinhardt; Jean Weissenbach; Scott W Roy; François Artiguenave; John H Postlethwait; J Robert Manak; Eric M Thompson; Olivier Jaillon; Louis Du Pasquier; Pierre Boudinot; David A Liberles; Jean-Nicolas Volff; Hervé Philippe; Boris Lenhard; Hugues Roest Crollius; Patrick Wincker; Daniel Chourrout
Journal:  Science       Date:  2010-11-18       Impact factor: 47.728

Review 4.  Impact of gene gains, losses and duplication modes on the origin and diversification of vertebrates.

Authors:  Cristian Cañestro; Ricard Albalat; Manuel Irimia; Jordi Garcia-Fernàndez
Journal:  Semin Cell Dev Biol       Date:  2013-01-03       Impact factor: 7.727

5.  Oikopleura dioica culturing made easy: a low-cost facility for an emerging animal model in EvoDevo.

Authors:  Josep Martí-Solans; Alfonso Ferrández-Roldán; Hector Godoy-Marín; Jordi Badia-Ramentol; Nuria P Torres-Aguila; Adriana Rodríguez-Marí; Jean Marie Bouquet; Daniel Chourrout; Eric M Thompson; Ricard Albalat; Cristian Cañestro
Journal:  Genesis       Date:  2014-07-21       Impact factor: 2.487

6.  The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

Authors:  Nicole King; M Jody Westbrook; Susan L Young; Alan Kuo; Monika Abedin; Jarrod Chapman; Stephen Fairclough; Uffe Hellsten; Yoh Isogai; Ivica Letunic; Michael Marr; David Pincus; Nicholas Putnam; Antonis Rokas; Kevin J Wright; Richard Zuzow; William Dirks; Matthew Good; David Goodstein; Derek Lemons; Wanqing Li; Jessica B Lyons; Andrea Morris; Scott Nichols; Daniel J Richter; Asaf Salamov; J G I Sequencing; Peer Bork; Wendell A Lim; Gerard Manning; W Todd Miller; William McGinnis; Harris Shapiro; Robert Tjian; Igor V Grigoriev; Daniel Rokhsar
Journal:  Nature       Date:  2008-02-14       Impact factor: 49.962

7.  Genetic restriction of HIV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, ALIVE Study.

Authors:  M Dean; M Carrington; C Winkler; G A Huttley; M W Smith; R Allikmets; J J Goedert; S P Buchbinder; E Vittinghoff; E Gomperts; S Donfield; D Vlahov; R Kaslow; A Saah; C Rinaldo; R Detels; S J O'Brien
Journal:  Science       Date:  1996-09-27       Impact factor: 47.728

8.  Myosin gene mutation correlates with anatomical changes in the human lineage.

Authors:  Hansell H Stedman; Benjamin W Kozyak; Anthony Nelson; Danielle M Thesier; Leonard T Su; David W Low; Charles R Bridges; Joseph B Shrager; Nancy Minugh-Purvis; Marilyn A Mitchell
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

9.  Selection-driven gene loss in bacteria.

Authors:  Sanna Koskiniemi; Song Sun; Otto G Berg; Dan I Andersson
Journal:  PLoS Genet       Date:  2012-06-28       Impact factor: 5.917

10.  Loss of genes implicated in gastric function during platypus evolution.

Authors:  Gonzalo R Ordoñez; Ladeana W Hillier; Wesley C Warren; Frank Grützner; Carlos López-Otín; Xose S Puente
Journal:  Genome Biol       Date:  2008-05-15       Impact factor: 13.583

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  193 in total

1.  Pth4, an ancient parathyroid hormone lost in eutherian mammals, reveals a new brain-to-bone signaling pathway.

Authors:  Paula Suarez-Bregua; Eva Torres-Nuñez; Ankur Saxena; Pedro Guerreiro; Ingo Braasch; David A Prober; Paloma Moran; Jose Miguel Cerda-Reverter; Shao Jun Du; Fatima Adrio; Deborah M Power; Adelino V M Canario; John H Postlethwait; Marianne E Bronner; Cristian Cañestro; Josep Rotllant
Journal:  FASEB J       Date:  2016-10-24       Impact factor: 5.191

Review 2.  Gain and loss of antibiotic resistant genes in multidrug resistant bacteria: One Health perspective.

Authors:  Misung Kim; Jaeeun Park; Mingyeong Kang; Jihye Yang; Woojun Park
Journal:  J Microbiol       Date:  2021-04-20       Impact factor: 3.422

3.  Comparative genomic analysis of collagen gene diversity.

Authors:  Farhan Haq; Nabeel Ahmed; Muhammad Qasim
Journal:  3 Biotech       Date:  2019-02-14       Impact factor: 2.406

4.  Signatures of Relaxed Selection in the CYP8B1 Gene of Birds and Mammals.

Authors:  Sagar Sharad Shinde; Lokdeep Teekas; Sandhya Sharma; Nagarjun Vijay
Journal:  J Mol Evol       Date:  2019-08-01       Impact factor: 2.395

5.  Loss of Function, a Strategy for Adaptation in Arabidopsis.

Authors:  Céline Caseys
Journal:  Plant Cell       Date:  2019-03-26       Impact factor: 11.277

6.  The evolutionary landscape of the Rab family in chordates.

Authors:  Ugo Coppola; Filomena Ristoratore; Ricard Albalat; Salvatore D'Aniello
Journal:  Cell Mol Life Sci       Date:  2019-04-26       Impact factor: 9.261

7.  Genomic organization underlying deletional robustness in bacterial metabolic systems.

Authors:  Sayed-Rzgar Hosseini; Andreas Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-18       Impact factor: 11.205

8.  The CaspBase: a curated database for evolutionary biochemical studies of caspase functional divergence and ancestral sequence inference.

Authors:  Robert D Grinshpon; Anna Williford; James Titus-McQuillan; A Clay Clark
Journal:  Protein Sci       Date:  2018-10       Impact factor: 6.725

9.  Gene Encoding a Novel Enzyme of LDH2/MDH2 Family is Lost in Plant and Animal Genomes During Transition to Land.

Authors:  L V Puzakova; M V Puzakov; A A Soldatov
Journal:  J Mol Evol       Date:  2019-01-04       Impact factor: 2.395

10.  Gene family innovation, conservation and loss on the animal stem lineage.

Authors:  Daniel J Richter; Parinaz Fozouni; Michael B Eisen; Nicole King
Journal:  Elife       Date:  2018-05-31       Impact factor: 8.140

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