Literature DB >> 27083722

Mechanisms for the formation of thymine under astrophysical conditions and implications for the origin of life.

Partha P Bera1, Michel Nuevo1, Christopher K Materese1, Scott A Sandford1, Timothy J Lee1.   

Abstract

Nucleobases are the carriers of the genetic information in ribonucleic acid and deoxyribonucleic acid (DNA) for all life on Earth. Their presence in meteorites clearly indicates that compounds of biological importance can form via non-biological processes in extraterrestrial environments. Recent experimental studies have shown that the pyrimidine-based nucleobases uracil and cytosine can be easily formed from the ultraviolet irradiation of pyrimidine in H2O-rich ice mixtures that simulate astrophysical processes. In contrast, thymine, which is found only in DNA, is more difficult to form under the same experimental conditions, as its formation usually requires a higher photon dose. Earlier quantum chemical studies confirmed that the reaction pathways were favorable provided that several H2O molecules surrounded the reactants. However, the present quantum chemical study shows that the formation of thymine is limited because of the inefficiency of the methylation of pyrimidine and its oxidized derivatives in an H2O ice, as supported by the laboratory studies. Our results constrain the formation of thymine in astrophysical environments and thus the inventory of organic molecules delivered to the early Earth and have implications for the role of thymine and DNA in the origin of life.

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Year:  2016        PMID: 27083722      PMCID: PMC5809119          DOI: 10.1063/1.4945745

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  25 in total

1.  Concentration by evaporation and the prebiotic synthesis of cytosine.

Authors:  K E Nelson; M P Robertson; M Levy; S L Miller
Journal:  Orig Life Evol Biosph       Date:  2001-06       Impact factor: 1.950

Review 2.  The antiquity of RNA-based evolution.

Authors:  Gerald F Joyce
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 3.  Advances in methods and algorithms in a modern quantum chemistry program package.

Authors:  Yihan Shao; Laszlo Fusti Molnar; Yousung Jung; Jörg Kussmann; Christian Ochsenfeld; Shawn T Brown; Andrew T B Gilbert; Lyudmila V Slipchenko; Sergey V Levchenko; Darragh P O'Neill; Robert A DiStasio; Rohini C Lochan; Tao Wang; Gregory J O Beran; Nicholas A Besley; John M Herbert; Ching Yeh Lin; Troy Van Voorhis; Siu Hung Chien; Alex Sodt; Ryan P Steele; Vitaly A Rassolov; Paul E Maslen; Prakashan P Korambath; Ross D Adamson; Brian Austin; Jon Baker; Edward F C Byrd; Holger Dachsel; Robert J Doerksen; Andreas Dreuw; Barry D Dunietz; Anthony D Dutoi; Thomas R Furlani; Steven R Gwaltney; Andreas Heyden; So Hirata; Chao-Ping Hsu; Gary Kedziora; Rustam Z Khalliulin; Phil Klunzinger; Aaron M Lee; Michael S Lee; Wanzhen Liang; Itay Lotan; Nikhil Nair; Baron Peters; Emil I Proynov; Piotr A Pieniazek; Young Min Rhee; Jim Ritchie; Edina Rosta; C David Sherrill; Andrew C Simmonett; Joseph E Subotnik; H Lee Woodcock; Weimin Zhang; Alexis T Bell; Arup K Chakraborty; Daniel M Chipman; Frerich J Keil; Arieh Warshel; Warren J Hehre; Henry F Schaefer; Jing Kong; Anna I Krylov; Peter M W Gill; Martin Head-Gordon
Journal:  Phys Chem Chem Phys       Date:  2006-06-12       Impact factor: 3.676

4.  (G-H)*-C and G-(C-H)* radicals derived from the guanine.cytosine base pair cause DNA subunit lesions.

Authors:  Partha Pratim Bera; Henry F Schaefer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-06       Impact factor: 11.205

5.  Organic synthesis via irradiation and warming of ice grains in the solar nebula.

Authors:  Fred J Ciesla; Scott A Sandford
Journal:  Science       Date:  2012-03-29       Impact factor: 47.728

6.  The deprotonated guanine-cytosine base pair.

Authors:  Maria C Lind; Partha P Bera; Nancy A Richardson; Steven E Wheeler; Henry F Schaefer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-09       Impact factor: 11.205

Review 7.  Photosynthesis and photo-stability of nucleic acids in prebiotic extraterrestrial environments.

Authors:  Scott A Sandford; Partha P Bera; Timothy J Lee; Christopher K Materese; Michel Nuevo
Journal:  Top Curr Chem       Date:  2015

8.  RNA evolution and the origins of life.

Authors:  G F Joyce
Journal:  Nature       Date:  1989-03-16       Impact factor: 49.962

9.  Prebiotic cytosine synthesis: a critical analysis and implications for the origin of life.

Authors:  R Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

Review 10.  Endogenous production, exogenous delivery and impact-shock synthesis of organic molecules: an inventory for the origins of life.

Authors:  C Chyba; C Sagan
Journal:  Nature       Date:  1992-01-09       Impact factor: 49.962

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  3 in total

1.  Mechanisms of the Formation of Adenine, Guanine, and Their Analogues in UV-Irradiated Mixed NH3:H2O Molecular Ices Containing Purine.

Authors:  Partha P Bera; Tamar Stein; Martin Head-Gordon; Timothy J Lee
Journal:  Astrobiology       Date:  2017-07-14       Impact factor: 4.335

2.  The Formation of Nucleobases from the Ultraviolet Photoirradiation of Purine in Simple Astrophysical Ice Analogues.

Authors:  Christopher K Materese; Michel Nuevo; Scott A Sandford
Journal:  Astrobiology       Date:  2017-07-19       Impact factor: 4.335

3.  Functional Properties of Amino Acid Side Chains as Biomarkers of Extraterrestrial Life.

Authors:  Christos D Georgiou
Journal:  Astrobiology       Date:  2018-08-21       Impact factor: 4.335

  3 in total

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